Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00176 ATGGATCTTCCACTTGTTAACGAATCATCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCGCGATTTGGCCTTTCGGCGGGGAGCAGGGCGGGAACGCATTGGGTCTCCGAATGGCTAGTTTGAGTCAGAATCTTGGTGGGTTTCCCGAGAGCTCCACGAATCGCGACGGATCAATGGAGGAATCGACTGTGACGGAGCAGAGTGGCGGTGGGAGAAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGATGAAAGTGGTGGCATCCAGAGACGAAGGTGGTGGTTTAAAAGCTGAAGTAGAACCTAGCTCAGCAGATGGTAAGAAGCTGGCCGAGCAAAGCCGGAAACCCGAACCACCAAAAGATTACATCCATGTCAGGGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCGAGAAGAGAAAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCGGGTTGTAACAAGGTTATTGGAAAAGCACTTGTTCTTGATGAGATAATAAATTATGTCCAATCACTGCAACGTCAAGTCGAGTTACTCTCCATGAAGCTTGAAGCTGTGAATGCCAGAATGAACTTAAGCCCAGCCATAGAAGGTTTTACCGCAAAAAATATGGTTAATCAACCATATGATGCAGTTGGAATATTATATGGTTCACAAGCGGCAAGAGATTATACCCAAGCTGCGCAACCGGAATGGTTGCATATGCAGATCGGTGGAAGCTTTGAAAGAACATCTTAG 831 46.57 MDLPLVNESSFSAANPSAYSLAAIWPFGGEQGGNALGLRMASLSQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRMKVVASRDEGGGLKAEVEPSSADGKKLAEQSRKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVELLSMKLEAVNARMNLSPAIEGFTAKNMVNQPYDAVGILYGSQAARDYTQAAQPEWLHMQIGGSFERTS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 801591 804367 - CmoCh10G001760.1 Cmo10g00176 389522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00176 276 MobiDBLite consensus disorder prediction 106 143 - -
Cmo10g00176 276 MobiDBLite consensus disorder prediction 47 68 - -
Cmo10g00176 276 MobiDBLite consensus disorder prediction 69 84 - -
Cmo10g00176 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Cmo10g00176 276 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Cmo10g00176 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 275 IPR024097 GO:0006355
Cmo10g00176 276 Coils Coil 200 220 - -
Cmo10g00176 276 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 275 - -
Cmo10g00176 276 MobiDBLite consensus disorder prediction 85 105 - -
Cmo10g00176 276 SMART finulus 159 209 IPR011598 GO:0046983
Cmo10g00176 276 MobiDBLite consensus disorder prediction 47 143 - -
Cmo10g00176 276 CDD bHLH_AtBPE_like 143 225 - -
Cmo10g00176 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 222 IPR036638 GO:0046983
Cmo10g00176 276 Gene3D - 150 225 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00176 Cmo11g00134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00176 Cmo-Chr10:801591 Cmo12g00637 Cmo-Chr12:4055791 2.37E-88 dispersed
Cmo10g00176 Cmo-Chr10:801591 Cmo11g00134 Cmo-Chr11:680598 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10424 PF00010 HLH 2.40E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00176 - - csv:101215588 490.73