Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00185 ATGTACACACAAAAAATCTTAGATGGCCTCTTCACCTCCATTTCTGAACACTGTGAAGAAATCAATGCAGAAAACAAAGATATCTCCAAGCCATTTCAGGAACTGGTTTTCTGTTTGGGCACGATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCATTGCTGATCAAACAGTTCTCTGCAAGAGAACAGGCGTCACTTTGTGCCGATGATACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCGGAGCAACAATCGGAAGTCGTAATCTGCCTACGAGATGTAGTACCGAACGAGAAACTTCTGCAAGAGGTATAGCCTGCGAACTGCCTAGGTTTTCCATGTCGCTGCTACCGAAAGCATCAGTGATAATGTCTTGGCTTGGCAACAGTGAGGCGCCTTGTAGAGATGTAGAAGCAGAAGGTATGAAGGTGCATTCATCTCAGGACAGTGGACAGAGCCCCGTCGATAGCCTCCACCTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTTCTAAAATGTCTGTTCCAACTCAAGAGCTGCACTTCAACAGCTCTTTCTAATCTTGATTCCTTGGTTGTCCAAATAAGAAAGGCATTGGAGAAATTCTTTCGTCCTGTGTTCAATCAATATTCCGACGCATACCTAATCTCCTCCGACCAGGCATTTCTTAGTGATAGTCATATTGAAGCCTTACAACGGTTGCTGCAGCATGGTGCCCACGACACTATACCTTTGAGCAACTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTCCGAGTTAGCAAACAGTTCACGTTTCAAGAAACGAAGGTGCTTCCAGTGATTAGAAAGAGCTGCAGCCATAAAACACAGCAACAGCTTCTGTATATGAGCCTCCGCACCTTGCCACTTGGGCTCTTGAAGTGTATTGTTAGTTGGTTTTCAACTCACTTATCTGAGGAAGAAATGAGATCTGTACTTCACACCAAATCGAAGGGAGATCTTCGGGTCAACAATGCGCTTGTTGCCCTCTTACATGAGTGGTTACGAATTGGCTACTCGGGCAAAACTTCGGTCGAACAATTTGGACAAGAATTGCAGAAAATTTTTCAAACCAGAAGCTATTTGTTGCATGGACAGGTGGATCAAATGAAGGGAGTTGTTGGAACTTTATCCTTGAGCTCAAATGTTCAATCTCATAAGGGCTCAAACTCTGAGGAAATTGGATTACTTTCCAACAACAAGAACAAGGGTTTCATGTCACATTCTTCGCCTGATGGTTCTTGCACTGCTTCAATGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAGATACATTTTCCAGGAACAGTGAAGGTGCCATGTCCTTACACTAAACATCTTTATGAGGAACGCCCACATTCTGCTTTTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAACTGGATTACTTTGTTCTTGGTTCGGCTAAGATGGTTGAAAATGTTGGGATCTTGACAGAGTTTATCAGGCGGTTCCAATTGGTCAAATATTTATATCAAATCCATACGGATGCTGAGGACCAGATTGCTTTTCCAGCATTGGAGAAGAAGGGAAAGTTCCAAAATATTAGCTACTCCTACTCCATTGATCATAAACTTGAAGTACACCAATTCAGTACAATATCCCTCATTCTTAATGAAATGTCTGAATTGCACGCTTCGATTTTTTATGGCAATACTGATAGGAAAATGTTTGGTCACCGGCAGCTCTGTCTGGAACTCCATGATATGTGCAAATCGCTGCACAAGTCGCTCTCTGACCATGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCTCAATCGAAGAGCAAGAAAAGCTCATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTAACAAGGAATACAATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAGGGTGACAGCTGAGGTGACGACTACTACTCCCTCACTGACTTCAGATCCCTTGGAAATCATCTCAAAATATCTATCCACGGAAGTAACTGATGTATGTGAAGGAAATGTTTTTGGAAAACCCATCACCTCAGAACAGAATGAAGGTCAATGGCATGCAACCGATGTCGAGAAGGCGGTAATATTCAACTTGAATGATGAAACAAAAGATTTTGATGGCAGCCAACGCAACAAAACATTTGAAGAATGCACAAAACTTGTTTCTCATGGGGATGTTGATAGGGATGCTGATGTTATCACAGAACATATGATCGATACAGAACGACCTGAAGAACATGAGAAATCAATCCAACATAACCACCTTCTTACAATTAGTCAAGAAGATCTGGAAGCAGCAATAAGAAGGGTCTCGAGAGACTCATCCTTAGACTCCAAAACTAAATCCTATATGATACAGAATTTGCTAATGAGGTTGGTAAGAAGTGCTCGTTCAATTTCGATTAGTGGAGAGTACCCCCTTCCCCTCCCATGGTCTCTATTTACAATAAGCTTTTGTGCTTTCTACCTGCTGATAAAATTTGACTCGAAGTTCACTATTTTGATACCGTCTCAGCCGTTGGAATGCCAAGCACCATACCCAATTAGAGACAAACGTCAGTATCCATCCTATAAGGATTCTTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTACACACATGCATACATTGTCATGATGAGACAACCGATCACTCGTTGGATAGAGATCCTTACACTCTTATCATTTTGACATTCATCTATAGAAAATCCATCACAAAGATGATGTGTATGAACTGCTTGGTAGTTCAGCCTATTGGCAAGACATGTTCAACTGTCTCTTGTGGTAATTTGTCAATGGGAAAATATTTCTGCAAGATCTGCAAACTATTTGACGATTCTAGAGATATCTACCATTGTCCATACTGCAACCTGTGCCGAGTGGGAAAGGGATTGGGGATTGACTACTTCCATTGCATGAACTGCAATGCCTGCATGTCCCGTGCACTCTCAGTTCATGTATGCAGAGAGAAGTGCCTTGAAGACAATTGCCCTATTTGCCACGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTCCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACACATTATACCTGCCCTATCTGTAGCAAGTCACTGGGAGACATGCAGGTGTACTTTGAGATGCTGGATGCATTGTTGGCTGAAGAGAAAATTCCAGATGAGTATTCTGGGAAAACTCAGGTCATACTGTGCAATGACTGTGAGAAGCGCGGAATGGCAGCATTCCACTGGTTGTACCATAAATGTCCCTGCTGCGGTTCATATAATACTAGGGTATTGTAA 3555 41.97 MYTQKILDGLFTSISEHCEEINAENKDISKPFQELVFCLGTIQTTICQHMIKEEQQVFPLLIKQFSAREQASLCADDTIGGASAMDDVFSSIGATIGSRNLPTRCSTERETSARGIACELPRFSMSLLPKASVIMSWLGNSEAPCRDVEAEGMKVHSSQDSGQSPVDSLHLWHGAIMKDLKEVLKCLFQLKSCTSTALSNLDSLVVQIRKALEKFFRPVFNQYSDAYLISSDQAFLSDSHIEALQRLLQHGAHDTIPLSNFLEKLCWDMESFVVRVSKQFTFQETKVLPVIRKSCSHKTQQQLLYMSLRTLPLGLLKCIVSWFSTHLSEEEMRSVLHTKSKGDLRVNNALVALLHEWLRIGYSGKTSVEQFGQELQKIFQTRSYLLHGQVDQMKGVVGTLSLSSNVQSHKGSNSEEIGLLSNNKNKGFMSHSSPDGSCTASMYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSAFNQPKPIDLIFFFHKALKKELDYFVLGSAKMVENVGILTEFIRRFQLVKYLYQIHTDAEDQIAFPALEKKGKFQNISYSYSIDHKLEVHQFSTISLILNEMSELHASIFYGNTDRKMFGHRQLCLELHDMCKSLHKSLSDHVDREEIELWPLFREFFSIEEQEKLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHERVTAEVTTTTPSLTSDPLEIISKYLSTEVTDVCEGNVFGKPITSEQNEGQWHATDVEKAVIFNLNDETKDFDGSQRNKTFEECTKLVSHGDVDRDADVITEHMIDTERPEEHEKSIQHNHLLTISQEDLEAAIRRVSRDSSLDSKTKSYMIQNLLMRLVRSARSISISGEYPLPLPWSLFTISFCAFYLLIKFDSKFTILIPSQPLECQAPYPIRDKRQYPSYKDSLKKEFGCKHYKRNCKLLAPCCNQLHTCIHCHDETTDHSLDRDPYTLIILTFIYRKSITKMMCMNCLVVQPIGKTCSTVSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPDEYSGKTQVILCNDCEKRGMAAFHWLYHKCPCCGSYNTRVL 1184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 838715 843357 + CmoCh10G001850.1 Cmo10g00185 389531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00185 1184 SUPERFAMILY RING/U-box 1066 1124 - -
Cmo10g00185 1184 Gene3D nmb1532 protein domain like 2 76 - -
Cmo10g00185 1184 Gene3D nmb1532 protein domain like 480 651 - -
Cmo10g00185 1184 SUPERFAMILY Zinc hairpin stack 1015 1069 IPR037275 -
Cmo10g00185 1184 Gene3D - 1149 1184 - -
Cmo10g00185 1184 CDD RING-H2_Pirh2 1077 1120 - -
Cmo10g00185 1184 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 922 1184 - -
Cmo10g00185 1184 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 146 860 - -
Cmo10g00185 1184 SMART ring_2 1078 1119 IPR001841 -
Cmo10g00185 1184 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 146 860 - -
Cmo10g00185 1184 Pfam Ring finger domain 1076 1119 IPR001841 -
Cmo10g00185 1184 ProSiteProfiles Zinc finger RING-type profile. 1078 1120 IPR001841 -
Cmo10g00185 1184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1071 1122 IPR013083 -
Cmo10g00185 1184 CDD Hr-like 487 630 - -
Cmo10g00185 1184 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 922 1184 - -
Cmo10g00185 1184 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 74 - -
Cmo10g00185 1184 ProSiteProfiles Zinc finger CTCHY-type profile. 1014 1077 IPR017921 -
Cmo10g00185 1184 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 6 74 - -
Cmo10g00185 1184 Pfam Zinc-ribbon 1125 1182 IPR039512 -
Cmo10g00185 1184 ProSiteProfiles Zinc finger CHY-type profile. 929 1011 IPR008913 GO:0008270
Cmo10g00185 1184 Pfam CHY zinc finger 936 1024 IPR008913 GO:0008270
Cmo10g00185 1184 SUPERFAMILY CHY zinc finger-like 927 1005 IPR037274 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00185 K16276 K16276, BTS; zinc finger protein-like protein - csv:101212459 1793.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01568 Cmo-Chr4:8015730 Cmo10g00185 Cmo-Chr10:838715 8.32E-17 dispersed
Cmo10g00185 Cmo-Chr10:838715 Cmo10g00326 Cmo-Chr10:1467626 5.36E-12 dispersed
Cmo10g00185 Cmo-Chr10:838715 Cmo11g00287 Cmo-Chr11:1390582 1.14E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g484 . . . . . . . . . . Cma10g00172 . Car10g00161 . . . . . . . . . . . Cla06g01615 Cam06g1794 Cec06g1843 Cco06g1849 Clacu06g1753 Cmu06g1697 Cre06g2514 . . . . . . . . . Blo15g00295 . . . . . . . Cmo10g00185 . . . . . . Cpe18g00697 . . . . . . . . . . . . . . Lsi06g01496 Csa01g00206 Chy02g02353 Cme02g01912
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009308 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00185 Cmo_Chr10 FPKM 2.989802 4.408517 5.772122 4.988769 4.476884 4.211607 6.005549 5.33527 4.911008 4.914551