Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00186 ATGCTTCTTTCGGGTGTCTGCCCCTTCGGAATCGATATTGTGACTGAATGGGGATGGCAATACAGGGTCGCTAGATCTTGTCTAGTGAGGCAGGCAGTCCAGGACACGCTTAGCATTTGTAGCTTACCTTTCTGGATGTTCTGGTGCGGTGTAGGGAGCCAAAATTCAGTTCCGTATGAATTGTATTTAGATTACTTTTTGGATCAGTCAGATATGGGAAGAAGTCTGTCCATATTCAAACCACTCTACTTGTTTCCCCGCCCAATCCATTTTGCGCCTTTTGATTTCTTTGACGATCCATCTTCTTCTCCGGTGACGGCAATCTCTCTGCATTATCCGCCACCGGAATCTGAACGTGTACGACTGTGTCCCCTTCCTACATCTTCTTCTACCTTCAATCTACGAAGGTTCTTGATGGGGCGCAAGAAGAAAAACATTGATCCGCGTTCTAAACAATCTCCGTCGGTTCGTGGAGTCGCCGTTGATGCTTCGAGTTTACCAAACGCCGCCGACAAGAGTTCAATACCTGATAAGGCAAGTAGTAACAACCAAAGTAGGATCGAGTCGGTGTCTGTCAATGAATCGGATGGCTTCTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTAACGTGCTTCGGCGCGGGAACCACTCTAAGGCACTTAGGCTTATGAAGGAGTTGAACTCCAAGATTAATAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAAGGTACTATTTGTGTCAAACTAGCATCGGTTATTGAGGACGTGAATACGAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCGAGCTCTCACCAAACTCGATTGAGTTTTCCCATTTTTATGCAAATTTGCTTTACGAGGGTGCAAATGATGCTAAGGAGTACGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCCGCTAAAGAAAGCTTGCAGGATGAAAAGGATCAGAAAATACCTACTGCAGAAGCGCGAATTACACACGTTCAGACTGAATTGAGGCATTTAGTTCAAAAATCAAACATATACTCGATATCTTCTTGGATGAAGAACTTGGGTAATGGGGAGGAGAAATTTAGGTTGATTCCGATTAGAAAAGTGACAGAGGACCCAATGGAGGCAACGTTGGTTCAGGCTAAGAGGGCAAATGAAATCAAGAAGGCAACGAAAACGCCTGAGGAGCGAAGGAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTGTTGCAACAGAAGTTTGAGTCGCCTCAAATGCAAAACGAAGGAGGTAAAGCTGATCGGACCCTGGATTCATCTTCAGGGTCTAGTACAAAAGTTGGTGAGCGGCGGAAACACGCCAATGTGCGGAAACATGGCTCTTCACGTGAAAGTAGGGATTGGGTTTATTCTTTTTGGAATTCCATGAGTACAGAATCAAAGAAAGAGTTGCTTAAGATCAAGATAAGTGATCTTAAGACTCATTTTAGTTCTTCAAAGGATACCTTGGCAAATGAAATTATTTCAGAAGCTGTGTCCTTTTATGATGCCAATAAAACATGGAATTTTTTGGTGTGTTGCAAATGTGATGAGAAATTTGTGTATCCGGAATCCCATATGCATCATGTGCTTCAAGAGCACATGGGTAACCTTTTGCCGAAAATGCAATCTATCATGCCACAGAATGTTGACAATGATTGGAGTCAAATGCTTCTTAATTGCTCTTGGAAACCATTTGATGTTTCAGCTGCAGCTAAAATACTCATAGGTCAAACAAAATGCAATGACTCGGAGTTGGTTAAGGATATCGGCTTACAGCATCACTCAGAATGTGAAGAGTCTCTCAAAGATGCATGTGGTTCATCTCCAGAGAAGCATAATCATGGGCATGGTTTAAATGAATTAGAGCTTTATGAAAAAATTAGCAACAGCGGATTTGCATTATCTGATAGTTTTCCAGTATCTGATGACTCTGAGCGAACAAGGCTTCTTGAAAAAATTCATGCGGTATTTGAGTTACTTATTGGACATAAATGCCTTGCTGCAAGCCATCTAAACAAGGTGATACAATTTGCAATGGATGAGTTACAGGGCATTGTTTCTGGATCTCATTTTCTAAAGCGGGGTCTGGACCAAACACCTCTATGTATTTGCTTTCTGGGCGCTTCTCAGCTTGGAAAAATCCTCAAGTTCTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAGTTGAAGATCCAGAGAGTGATAAACAAGCTGTTGATGTCAAAGAGAAAGTTGTTCTCAGTGGAGATGCGTCACTTCTCCTAAACGAGTGTTTTCTGTCGTCTGATATCCCTCATGCCAATGATCAGGTTGCAGCCACAGATCATATGCCTGCTGCAACTGTTAAAGATGCTACTGCAAATGAGGTTCTTTCTGGTGTCGATTCTTTCCTATCTTGGATATACGCAGATCCCTCTAATGGGGAACAGGTAGCATCATGGACAAAAACAAAGGAAGAAAAGACAAAACAACAATTGGAAATTTTTCAAATGCTTGAGAGGGAATTTTACCTTCTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCGTTGCAGTCAGTAGAGGATCTCTTCTTTGAGGAGAGCAAGAAGGAGGAGGCTACGGCTGAATTTATCCCCAAGAGTTATGTGTCAGTTCTGAGGAAGCGAAGAGAGGAGCTTCTTGAGACTGAAAATAATGTGATGTATATCGGCAGTAGGTTTGAGTTAGATGTTGTAACTAATATATTGAAAGAAGCTGAAGCTCTGAAGGTTAATCAATTTGGATATGAGGAAACTGTTGCCAATGTGCCTTCTCAGTCATGTGATCTGGAATCCGGTGAAGATGAAAATTGGAGGGCTAAGGGTTATTTGCATCAAGTTGATACTTGTATAGAAATTGCAATAAAGAGACAGAAAGAACAATTATCTATTGAGGTTAGCAAAATTGATGCACGTATCATGCGGAATGTTTCTGGAATGCAACAGATGGAACTTAAGCTCGAGCCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCATATTTAGAAGATTTGGCTGAAAAAGATGCTACGAAGAAGTCTGATGCTGCAAGAGAGGCATTTTTAGCTGAACTGGCACTGGATTCAGAAAAAGGTATCAAAGGAGGAAGTGATAATTCGAGACATGCACATGAAAAGCCAAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAATCCAAGGACTCTAAGGTGGTCAGTGGTCCTGAACAGAATGTGCTTCATGATGGGGCTGTCGATGGAGTTCCCGTTCAAGTTTCACCTGATGGTGATGTGGCAAAGGTAGACGTTGCTGCTTTTGAGAACTCTGATGCTTTAAGACTACAGGAGGAAGAGCTTAGACGCAAAAGTGAGCTGGAAGCAGATGAAAGAAGGCTAGAAGAGGCTCTGGAGTATCAAAGACGGGTTGAGAATGAGGCTAAACAAAAGCTTCTGGCTGAACTACAAAAGAAATCTGCCCAGACAAATCTAGAGGACAAAGTTGCTCTGGCAGAACATGATAATCCCATTGAACTCGTCCCCAGTGTTGAGGGTGCTGAAGAGCATTTTAAACCCTCTGTTGTGGATCAATTGGCAGAAAGTGAATCGATTCCCGGCTTGTCTAGGAATTTTCCTGCAATGCCAAATGCTGTTACAGGTTCATACAATGCAGGAATTATAGAGAATACCCTGCCGCCTTCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTGCAATCAAACGAGTTGATGGAAATCAGCCTTCACAATCTTATAATGATAATGTAGCCTTTGACAACCAATTGAATGAGCAAGTCAGAGATCATGACAATCTCGTAGTAGATAGTGTTAATCCACTCTCTGAAGAAAATGGTACAAAGACTTTGGGACAACAACATGCGGAGGATGATGAGGAAAGATTTCAAGCTGACCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGGAATTGCCCTTGATTACAAGTTCCAGTACACCATCGATCAGCTGTGGTGAAGTAGATGGTAATGATCTTCCATCAAATGAACTCAACGTAGAGAATGTGCAGGAAGCAGATGTATTTGGTACAGGACTTAAAAATGAAGTTGGTGAATATAATTGCTTTCTGAATGTGATTATTCAGTCCTTATGGCATTTAAGATGGTTTCGAGAAGAGTTCCTGAGAAGATCTACGACTGAACATGTTCATGTTGGGGATCCTTGTGTTCTTTGTGCATTATATGAAATCCTTGCTGCCTTGAGCACGGCATCTGCAGATTCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATTTTTGTCCTGATAGTAATTTCTTCCAAGAGGGCCAGATGAATGATGCCTCTGAAGTGCTAGCAGTCATTTTTGATTGCCTACACAAGTCGTTGACTCGTAGTTCGGGTGTTTCTGATACAGAATCAGTGGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACACTTGTTTGGTTCATTCCATCTTTGGTATGGACATTTTTGAACGAATGAATTGCTATAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCCCATGCCCTTCGAACAATGAAGGTTATGTGTACAGAAAGCTCCTTTGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGCTGCGGAAAGCTCAATTACATTCATCGCTTTCTCTCTGCAGCACCACACGTGTTCACAACAGTCTTGGGTTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCGACATTAGCTGCTCTGAATACTGAAGTAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAATACTACCCATAATTTAGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAATGTACGATGATAAAACTGTTAAGGTAATTGGCGGCTGGCCTGATGTTCTTACCATGTGCGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 5250 42.3 MLLSGVCPFGIDIVTEWGWQYRVARSCLVRQAVQDTLSICSLPFWMFWCGVGSQNSVPYELYLDYFLDQSDMGRSLSIFKPLYLFPRPIHFAPFDFFDDPSSSPVTAISLHYPPPESERVRLCPLPTSSSTFNLRRFLMGRKKKNIDPRSKQSPSVRGVAVDASSLPNAADKSSIPDKASSNNQSRIESVSVNESDGFSYSTIKLECERALNVLRRGNHSKALRLMKELNSKINNSVHSALIHRVQGTICVKLASVIEDVNTKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEGANDAKEYEEVVQECERALGIENPIDPAKESLQDEKDQKIPTAEARITHVQTELRHLVQKSNIYSISSWMKNLGNGEEKFRLIPIRKVTEDPMEATLVQAKRANEIKKATKTPEERRKEIEVRVAAARLLQQKFESPQMQNEGGKADRTLDSSSGSSTKVGERRKHANVRKHGSSRESRDWVYSFWNSMSTESKKELLKIKISDLKTHFSSSKDTLANEIISEAVSFYDANKTWNFLVCCKCDEKFVYPESHMHHVLQEHMGNLLPKMQSIMPQNVDNDWSQMLLNCSWKPFDVSAAAKILIGQTKCNDSELVKDIGLQHHSECEESLKDACGSSPEKHNHGHGLNELELYEKISNSGFALSDSFPVSDDSERTRLLEKIHAVFELLIGHKCLAASHLNKVIQFAMDELQGIVSGSHFLKRGLDQTPLCICFLGASQLGKILKFLQELSQSCGIGRYSDKSTGQVEDPESDKQAVDVKEKVVLSGDASLLLNECFLSSDIPHANDQVAATDHMPAATVKDATANEVLSGVDSFLSWIYADPSNGEQVASWTKTKEEKTKQQLEIFQMLEREFYLLQNLCERKCEHLNYEEALQSVEDLFFEESKKEEATAEFIPKSYVSVLRKRREELLETENNVMYIGSRFELDVVTNILKEAEALKVNQFGYEETVANVPSQSCDLESGEDENWRAKGYLHQVDTCIEIAIKRQKEQLSIEVSKIDARIMRNVSGMQQMELKLEPVSAHDYQSILLPLVNSYLRAYLEDLAEKDATKKSDAAREAFLAELALDSEKGIKGGSDNSRHAHEKPKEKKRSKEFRKSKDSKVVSGPEQNVLHDGAVDGVPVQVSPDGDVAKVDVAAFENSDALRLQEEELRRKSELEADERRLEEALEYQRRVENEAKQKLLAELQKKSAQTNLEDKVALAEHDNPIELVPSVEGAEEHFKPSVVDQLAESESIPGLSRNFPAMPNAVTGSYNAGIIENTLPPSDRKKGRKGRRHKVAIKRVDGNQPSQSYNDNVAFDNQLNEQVRDHDNLVVDSVNPLSEENGTKTLGQQHAEDDEERFQADLKKAVRQSLDAFQEQQELPLITSSSTPSISCGEVDGNDLPSNELNVENVQEADVFGTGLKNEVGEYNCFLNVIIQSLWHLRWFREEFLRRSTTEHVHVGDPCVLCALYEILAALSTASADSRREAVAPTSLRIALSNFCPDSNFFQEGQMNDASEVLAVIFDCLHKSLTRSSGVSDTESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINAHALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHRFLSAAPHVFTTVLGWQNTCESADDITATLAALNTEVDISVLYRGLDPNTTHNLVSVVCYYGQHYHCFAYSHDKKCWIMYDDKTVKVIGGWPDVLTMCEKGHLQPQVLFFEAVN 1749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 843391 852618 - CmoCh10G001860.1 Cmo10g00186 389532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 1088 1118 - -
Cmo10g00186 1749 ProSitePatterns Zinc finger C2H2 type domain signature. 536 557 IPR013087 -
Cmo10g00186 1749 Coils Coil 1162 1211 - -
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 143 188 - -
Cmo10g00186 1749 CDD Peptidase_C19 1508 1746 - -
Cmo10g00186 1749 SUPERFAMILY Cysteine proteinases 1416 1746 IPR038765 -
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 430 454 - -
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 1086 1129 - -
Cmo10g00186 1749 Gene3D Cysteine proteinases 1402 1749 - -
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 167 188 - -
Cmo10g00186 1749 Gene3D Tetratricopeptide repeat domain 200 327 IPR011990 GO:0005515
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 1271 1291 - -
Cmo10g00186 1749 Pfam Ubiquitin carboxyl-terminal hydrolase 1417 1724 IPR001394 GO:0004843|GO:0016579
Cmo10g00186 1749 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 139 1749 - -
Cmo10g00186 1749 Pfam Protein of unknown function (DUF629) 480 998 IPR006865 -
Cmo10g00186 1749 Pfam Protein of unknown function (DUF627) 209 319 IPR006866 -
Cmo10g00186 1749 Coils Coil 257 277 - -
Cmo10g00186 1749 MobiDBLite consensus disorder prediction 430 470 - -
Cmo10g00186 1749 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1416 1748 IPR028889 -
Cmo10g00186 1749 PANTHER UBIQUITIN SPECIFIC PROTEINASE 139 1749 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00186 Cmo11g00142 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00186 Cmo-Chr10:843391 Cmo12g00865 Cmo-Chr12:7886153 1.64E-06 dispersed
Cmo10g00186 Cmo-Chr10:843391 Cmo11g00142 Cmo-Chr11:711512 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00186 - - mcha:111007268 2564.64