Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00189 ATGGAAGAAAAGGGCGAGAAACCTGAGGTTTTGGAGGCTGTGTTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCACAGCGGCTGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAATTCTTGAAGTTTTTGGGGTTTATGTGGAATCCCCTCTCATGGGTTATGGAAGCTGCTGCTATTATGGCTATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAAGATTTTGTTGGTATTGTCGCCCTGTTGCTTATCAACTCAACAATTAGTTTTATTGAGGAAAACAATGCCGGTAACGCTGCAGCTGCTCTAATGGCTAGCTTAGCTCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGTGTGCAAGATGCTTCGGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATAATTCCAGCTGATGCTCGTCTTCTAGAAGGGGATCCATTGAAAATTGATCAGTCTGCTCTTACAGGCGAGTCTCTTCCTGTTACGAAAGGTCCGGGTGATGGCATATATTCTGGTTCTACTTGTAAACAGGGAGAGATTGAAGCGGTAGTCATTGCCACTGGTGTTCATACTTTCTTCGGCAAAGCAGCTCACCTCGTTGACACCACTAATCAAGTGGGACACTTCCAGAAGGTCTTAACTGCAATCGGGAACTTCTGCATATGTTCAATTGCTTTGGGGATGATTACAGAAATTATTGTCATGTACCCAATTCAAGATCGTGAATATCGTCCTGGAATTGACAATCTTCTCGTGCTTCTGATTGGAGGAATTCCAATTGCCATGCCCACAGTCCTCTCTGTGACCATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAGATGGCAGGTATGGATGTGCTTTGCAGTGATAAGACTGGAACACTTACATTAAACAAGCTAACTGTCGACAAAAATCTTGTTGAGGTTTTTGCTAAAGGAGTGGATGTGGATACTGTGGTTCTAATGGCAGCCCGGGCATCAAGAATGGAGAATCAAGATGCTATTGATACTGCTATTGTTGGGATGCTTGCTGACCCAAAAGAGGCTCGTGCCAGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACTGATAAGCGGACTGCATTGACTTACATAGACCATGAGGGTAAAATGCATAGAGTCAGCAAAGGTGCACCAGAGCAGATTTTGAACCTAGCGCACAATAAGTCGGAGATTGAGCGCAAAGTTCATGCTGTGATAGACAAGTTTGCAGAACGAGGTTTACGCTCTCTAGCTGTCGCATACCAGGAAGTTCCAGATGGTAGGAAGGAGAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTTCTGCCACTGTTTGACCCACCAAGGCATGATAGTGCAGAGACAATAAGGAGGGCCTTAAACCTCGGAGTGAATGTGAAGATGATTACTGGTGACCAGCTGGCTATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCTTCATCTGCTTTATTAGGTCAGGACAAGGATGAGTCTATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGTGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCTAGGAAACATATCTGTGGAATGACTGGCGATGGGGTAAATGATGCTCCCGCCCTTAAAAAAGCAGACATAGGCATTGCTGTTGCTGATGCCACCGATGCTGCTCGTAGTGCTTCAGACATAGTCCTCACAGAGCCTGGTTTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGAGCAATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCAATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTTCCACCTTTTATGGTGCTCATCATTGCCATTCTCAATGATGGTACAATAATGACGATATCTAAGGACAGAGTGAAACCATCTCCTTTGCCTGATAGCTGGAAGCTTGCGGAAATTTTTACAACTGGCATTATACTTGGCGGCTACATGGCAATGATGACTGTTATCTTCTTTTGGGCAGCCTATAAGACCGACTTTTTTCCACGAATCTTTGGGGTGGCAACTCTTGAGAAAACTGCTCACGATGACATTAGGAAACTTGCCTCAGCTATTTATCTGCAAGTAAGCACTATAAGTCAGGCTCTTATATTTGTTACACGCTCTCGAAGTTGGTCTTATGTGGAGCGTCCTGGACTATTACTGGTTGCGGCTTTTCTGGTTGCACAGCTGATTGCTACTTTAATTGCTGTTTATGCAAACTGGAGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTAATCTGGCTTTACAATATCATCTTTTACATCCCACTTGATCTCATTAAGTTCTTTATACGATATGTTTTGAGTGGGAGGGCTTGGGACCTTGTTATTGAACAAAGAATTGCCTTTACGAGGCAAAAGGACTTCGGGAAGGAACAACGGGAGCTCCAATGGGCTCATGCTCAAAGAACACTACATGGATTGCAAGCACCTGATGCCAAGATGTTCCATGACCGGACCCATTTCACTGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCAGAAATTGCAAGGTTGAGGGAACTACACACCCTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATTGATACAATTCAGCAAGCTTACACAGTGTGA 2880 44.48 MEEKGEKPEVLEAVLKETVDLENIPIEEVFENLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIVALLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIALGMITEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRMENQDAIDTAIVGMLADPKEARASIQEVHFLPFNPTDKRTALTYIDHEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYMAMMTVIFFWAAYKTDFFPRIFGVATLEKTAHDDIRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYVLSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 861870 867896 + CmoCh10G001890.1 Cmo10g00189 389535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00189 959 Gene3D - 99 824 - -
Cmo10g00189 959 PANTHER PLASMA MEMBRANE ATPASE 1 6 939 - -
Cmo10g00189 959 Coils Coil 910 930 - -
Cmo10g00189 959 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Cmo10g00189 959 PANTHER CALCIUM-TRANSPORTING ATPASE 6 939 - -
Cmo10g00189 959 Gene3D - 137 221 - -
Cmo10g00189 959 SUPERFAMILY HAD-like 330 640 IPR036412 -
Cmo10g00189 959 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Cmo10g00189 959 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Cmo10g00189 959 Gene3D - 331 630 IPR023214 -
Cmo10g00189 959 Gene3D - 908 959 - -
Cmo10g00189 959 Gene3D - 346 493 IPR023299 GO:0000166
Cmo10g00189 959 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Cmo10g00189 959 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Cmo10g00189 959 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Cmo10g00189 959 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Cmo10g00189 959 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Cmo10g00189 959 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Cmo10g00189 959 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Cmo10g00189 959 SFLD Haloacid Dehalogenase 316 644 - -
Cmo10g00189 959 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Cmo10g00189 959 Pfam E1-E2 ATPase 135 313 - -
Cmo10g00189 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00189 959 SFLD p-type atpase 316 644 IPR044492 -
Cmo10g00189 959 CDD P-type_ATPase_H 39 850 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo10g00189 959 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 39 815 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cmo10g00189 959 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 856 IPR023298 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00189 Cmo13g00952 CCT
Cmo10g00189 Cmo18g00101 CCT
Cmo10g00189 Cmo18g00101 ECH
Cmo10g00189 Cmo13g00952 ECH
Cmo10g00189 Cmo11g00144 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02878 Cmo-Chr4:20497410 Cmo10g00189 Cmo-Chr10:861870 0 dispersed
Cmo10g00189 Cmo-Chr10:861870 Cmo12g00243 Cmo-Chr12:1590880 0 dispersed
Cmo10g00189 Cmo-Chr10:861870 Cmo11g00144 Cmo-Chr11:724695 0 wgd
Cmo10g00189 Cmo-Chr10:861870 Cmo13g00952 Cmo-Chr13:8289327 0 wgd
Cmo10g00189 Cmo-Chr10:861870 Cmo18g00101 Cmo-Chr18:691667 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00189 K01535 - csv:101217264 1793.86