Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00196 ATGGGTCTCTTCATTTGTGTCTTCTCCATGGTTGTAGCAGCAACCCTTTTAAGCCACTGCTCTGTTTCTCTCACTGAAGATGGTTTAACATTGTTGGAAATCAAAAGTGGTTTAAATGACACCAAGAACGCTCTCAGTAACTGGAGCCCTTCAGATGAATCTCCCTGCAAATGGACGGGTATCTCTTGCCATCCCCAGGACTCTCGTGTCAGCTCAATTAATCTACCATACATGCAACTAGGAGGGATTATATCTCCCAGCATTGGTAAACTTAGCAGATTGCACAGACTGGCTCTCCACCAAAACGGCTTACATGGGTATATCCCCAATGAACTTGCTAATTGTTCTGAACTTAGAGCACTGTACCTGAGGGCTAACTATCTTGAAGGTGGCATTCCATCAAATATTGGAAACCTTTCTTACCTTGCCATACTGGATCTATCAAGCAATTCCTTTAAGGGAAGCATACCATCATCAATTGGTCGTCTCACACACTTGCGCAATCTGAATTTATCTACCAACTCTTTCTTTGGAGAAATCCCAGATATTGGAGTTCTTAGCACCTTTGGGAATGACTCGTTCCTTGACAATCAAGGTCTTTGTGGCCGGCAAGTGAACAAGCCCTGCCGGACCTCACTCGGATTTCCTGCTGTCTTACCACATGCTGAAAGTGATGAAGCTGCAGTTCCTGCAAAACGATCCTCTCATTACTTGAAGGGACTGTTGATTGGTGCCATATCGACAGCCGGGTTCGTGTTGGTCGTATTTATAGTGTTCATGTGGACTCGTTTGCTGTCAAAGAAAGAAAGAGCTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAGAAACTACGAACCAAGTGAGAAGCTTATTACATTCCATGGCAATCTACCGTATCCAACATGTGAGATCATAGAGAAGCTGGAGGGCCTGAATGAGACACATGTTATTGGCTCGGGCGGATTAGGCACTGTGTATCGGATGGTCATGAATGATCGTGGAACATTTGCTGTAAAGAAAATTGATAGGACTCAGGATGGTTCAGAGCTTGTTGAAAGAGAATTGGAGATTTTGGGAAGCATTAAACACATAAACTTAGTGAAATTGCGTGGCTATTGCAGGCTTCCTTCTTCAAAGCTTCTGATATATGATTATCTGACGGAGGGTAGCTTGGATGATTTCTTGCATGAACATGGAGCAGGAAAGTGTTTGGATTGGAGTGCTCGGTTAAACATAGCGCTCGGCACCGCTCGAGGACTGGCATACTTGCACCATGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGAGAACTTAGAGGCGCACGTAGCTGACTTTGGTCTTGCAAAGCTTTCAGTTGATGGGGATTCCCATATCACACCAGTTGTTGCTGGCACATTTGGTTATCTGGCTCCAGAATACTTGCAAAGTGGGATAGGAACTGAGAACTCTGATGTTTATAGCTTTGGAGTGCTGTTGCTGGAGCTTGTAACAGGGAAGAGACCAAGTGATGCATTTTTCTCAAAGAGGGGCCTAAATGTTGTTGGTTGGTTGAACACCCTGAGAGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGTGGAAACATTAGAAGTGATTCTCGAAATAGCGGCGAGGTGCACTAATGGCAACCCGGCTATGCGGCCTACAATGAACCAAGTACTGCAGCTGCTAGAGCGAGAGGTTATGTCGCCCTGCCCGAGCGATTACTCCGAGTCTCACTCGGATTATTCATGA 1800 44.83 MGLFICVFSMVVAATLLSHCSVSLTEDGLTLLEIKSGLNDTKNALSNWSPSDESPCKWTGISCHPQDSRVSSINLPYMQLGGIISPSIGKLSRLHRLALHQNGLHGYIPNELANCSELRALYLRANYLEGGIPSNIGNLSYLAILDLSSNSFKGSIPSSIGRLTHLRNLNLSTNSFFGEIPDIGVLSTFGNDSFLDNQGLCGRQVNKPCRTSLGFPAVLPHAESDEAAVPAKRSSHYLKGLLIGAISTAGFVLVVFIVFMWTRLLSKKERAAKSYMEVKKQRNYEPSEKLITFHGNLPYPTCEIIEKLEGLNETHVIGSGGLGTVYRMVMNDRGTFAVKKIDRTQDGSELVERELEILGSIKHINLVKLRGYCRLPSSKLLIYDYLTEGSLDDFLHEHGAGKCLDWSARLNIALGTARGLAYLHHDCCPKIVHCNIKSSNILLDENLEAHVADFGLAKLSVDGDSHITPVVAGTFGYLAPEYLQSGIGTENSDVYSFGVLLLELVTGKRPSDAFFSKRGLNVVGWLNTLRGEDQLENIVDNRCKNADVETLEVILEIAARCTNGNPAMRPTMNQVLQLLEREVMSPCPSDYSESHSDYS 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 878673 882732 + CmoCh10G001960.1 Cmo10g00196 389542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00196 599 ProSiteProfiles Protein kinase domain profile. 311 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00196 599 SUPERFAMILY L domain-like 25 191 - -
Cmo10g00196 599 Gene3D Transferase(Phosphotransferase) domain 1 386 589 - -
Cmo10g00196 599 Gene3D Phosphorylase Kinase; domain 1 271 385 - -
Cmo10g00196 599 SUPERFAMILY Protein kinase-like (PK-like) 285 580 IPR011009 -
Cmo10g00196 599 Pfam Protein kinase domain 313 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00196 599 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cmo10g00196 599 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Cmo10g00196 599 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 591 - -
Cmo10g00196 599 Pfam Leucine rich repeat 118 175 IPR001611 GO:0005515
Cmo10g00196 599 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 591 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00196 Cmo18g00100 CCT
Cmo10g00196 Cmo11g00145 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00196 Cmo-Chr10:878673 Cmo05g00035 Cmo-Chr5:125060 5.11E-103 dispersed
Cmo10g00196 Cmo-Chr10:878673 Cmo11g00145 Cmo-Chr11:731029 0 wgd
Cmo10g00196 Cmo-Chr10:878673 Cmo18g00100 Cmo-Chr18:681892 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74597 PF00069 Pkinase 1.20E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00196 - - csv:101217728 1065.45