Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00197 ATGGCTTTACGTGCTGCAACAAGTGCAGTGCTATCCCTGTCTCAGCGATGCCCAAATGCACAATCGACTCCCAACCTTAGATCACCATTCACAATGTCGCAGTCCACGTCCAGGCCGCTCAAACTTGAAGGCAAAGTAGCTATTGTCACCGGCGGAGCAAGCGGCATCGGCGAGTCCACCGTACGTCTGTTCGCCGACAACGGCGTCAAAGTAGTCGTAATCGCCGATATCCAAGACGACCGAGGACGCCAAGTTGCCGAATCGATCGGCAGCCAAAGGTGTAGCTACATCCGCTGCGACGTAACGGACGAAAATCAAGTGCAATCAATGGTGGAATCAACGGTGAAAAAGTACGGAAAATTGGACGTGATGTTCAGCAACGCAGGAGTATTAAGCAGCCAAGACCAAACCATCCTGGACCTGGATCTCTCAGCCTCAGACAAACTGTTCGAGGTGAACGTGAAGGGGATGGCGGCGTGCGTGAAGCACGCGGCTAGGGCGATGGTTGAAGGGGGAGTAAGAGGGAGCATCGTGTGCACGGGGAGTGTGGCGGCAGCGAACGGGAGTAGACGGAGGACGGACTACTGTATGTCGAAGCACGCAGTGTTAGGGTTGGTGCGATCGGCGAGCGTGCAGCTTGGAGGGAAGGGAATAAGGGTGAATTGCGTGTCGCCGAGTGGGGTAGCGACGGCGGCGACATGTAGGTCGCTGGGAATGGGAATGGAGGACGTCGAGAAAGCGTACAGAGGAATGTCGAGGCTGGAAGGTGTAGCGTTGAAGGCGAGTCATGTCGCTGACGCTGTGCTCTTCCTCGCTTCCGATGACTCAGCCTTTGTCACGGGCCATGACCTTGTGGTCGACGGTAGTTTCGTCCCTGTCCTTTAA 885 55.82 MALRAATSAVLSLSQRCPNAQSTPNLRSPFTMSQSTSRPLKLEGKVAIVTGGASGIGESTVRLFADNGVKVVVIADIQDDRGRQVAESIGSQRCSYIRCDVTDENQVQSMVESTVKKYGKLDVMFSNAGVLSSQDQTILDLDLSASDKLFEVNVKGMAACVKHAARAMVEGGVRGSIVCTGSVAAANGSRRRTDYCMSKHAVLGLVRSASVQLGGKGIRVNCVSPSGVATAATCRSLGMGMEDVEKAYRGMSRLEGVALKASHVADAVLFLASDDSAFVTGHDLVVDGSFVPVL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 882948 885068 + CmoCh10G001970.1 Cmo10g00197 389543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00197 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 289 IPR036291 -
Cmo10g00197 294 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 34 290 - -
Cmo10g00197 294 MobiDBLite consensus disorder prediction 14 37 - -
Cmo10g00197 294 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 34 290 - -
Cmo10g00197 294 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 45 228 - -
Cmo10g00197 294 Gene3D - 31 292 - -
Cmo10g00197 294 Pfam Enoyl-(Acyl carrier protein) reductase 51 288 - -
Cmo10g00197 294 PRINTS Glucose/ribitol dehydrogenase family signature 46 63 IPR002347 -
Cmo10g00197 294 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Cmo10g00197 294 PRINTS Glucose/ribitol dehydrogenase family signature 119 130 IPR002347 -
Cmo10g00197 294 PRINTS Glucose/ribitol dehydrogenase family signature 254 274 IPR002347 -
Cmo10g00197 294 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Cmo10g00197 294 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Cmo10g00197 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 IPR002347 -
Cmo10g00197 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 214 IPR002347 -
Cmo10g00197 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 183 IPR002347 -
Cmo10g00197 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00197 - - - cmax:111484820 474.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00197 Cmo-Chr10:882948 Cmo17g00983 Cmo-Chr17:8533943 2.29E-91 dispersed
Cmo18g00507 Cmo-Chr18:3592183 Cmo10g00197 Cmo-Chr10:882948 3.74E-09 dispersed
Cmo10g00197 Cmo-Chr10:882948 Cmo14g00027 Cmo-Chr14:145059 5.24E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g496 . . . . . . . Bma12g01007 . . . . Car10g00168 . . . . . . . . . . . . . . . . . . . . Cone13ag0088 Cone19ag0091 . . . . . Blo15g00305 . . . . . . Sed08g2640 Cmo10g00197 . . . . . . . Bhi08g01181 Tan05g2690 Cmetu03g1526 . Hepe07g1730 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014675 1 0 2 1 1 0 1 0 0 0 0 0 0 0 0 1 0 2 0 0 0 4 0 1 1 0 0 0 1 3 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00197 Cmo_Chr10 FPKM 3.480496 4.451838 45.910683 43.52887 373.887848 344.657349 348.272217 8.263843 7.254136 6.57548