Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00198 ATGGAGGCTGACGCTTTGCCAACCACAGCTGGAGGAGACGAAGAAGCTGCGCCCAAACAAGATGATGAGCAGCACGATGAAGAAAGAATCAAAAGAACGAAAGCTGAAATGAGGGAAGTAAGGGAAGAAAACGAGAGGCTGAAGAAACGTTTGGATGAAACAATGAAGAATTACGAGACACTGAAAAGGCAGGTCCATCAAATGGGTCAAATCAGAGCAGCAAAAAAGTCAACACAAACAAGTGCAATTGGCATACGTAACGATGAGGTTGAAGAAATGGACCAAATGGTTTCACTCACATTAGGAAGAAGATTATTCAGCAACATTTCCTCACCAACAAAATCAGATCCTCAAAACGTGGGCTTTCTGGGTTTGCCGGCGCCCCCCACCGGAGAAGATGAAGTTTCTCGTCAGAATCCTCCCAAGAAACCTAGGGTTTCTGTGAGAGCCCGGTGTGATGCCCCGTTGGTGCAGATGAACGATGGATGCCAATGGAGGAAATACGGGCAGAAGACAGCAAAAGGAAATCCTTGCCCTAGAGCTTATTATCGTTGCACAGGTGCACCCTCATGTCCCGTTAGGAAACAGGTGCAAAGGAGTGTTGATGATATTTCCATACTAATCACCACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCGGCTGCTGCCTCGATGCTCCTCTCGGGCCCTTCTTCATTCGCCACCGCTGCGGCGGATCTCCATGGATTGAACTCGTATCTCTCTAACAACACAAATTCAAAGGGATTCTACTTGCCAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATCACTTTAGACCTCACTTCAAACTCTCCCTCAGCTAATTATCCCCCAAAGTTTCCTCTTGATTTTGGCTCTTCTCAATACAGCTTCATGCCTTGGAACAATAGTAACAGTGGCTATGGCTATGGCAATGCCAGTCAAGCCGGTCATCAACAATTTTCCAAATCTTCAACTCCGCCCCCGCCATTGTCGTCACCTCTACCTGACACGATTGCGGCAGCAACTAAGGTGATTACGTCCGACCCGAATTTCCATTCGGCATTGGCAGCTGCCCTGAGCTCGATCATCGGCGGCGGGAATGGGAGCAAGACAGCTCCTCCAATGGCTAGCTATGTTGAAGAACCTCAGGGAAATGTGTGTGCATCAAGTTTAAGCTCTCAACAAGGTAGTATGGGATTTGAGGCAGCTAAATCATTATCATGCTCCACCTCCAAGAGTCCTTCCTCATCTCCTGGGGATAGTAGAGAAAATGGCAAGTGA 1326 47.81 MEADALPTTAGGDEEAAPKQDDEQHDEERIKRTKAEMREVREENERLKKRLDETMKNYETLKRQVHQMGQIRAAKKSTQTSAIGIRNDEVEEMDQMVSLTLGRRLFSNISSPTKSDPQNVGFLGLPAPPTGEDEVSRQNPPKKPRVSVRARCDAPLVQMNDGCQWRKYGQKTAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSFATAAADLHGLNSYLSNNTNSKGFYLPNSSMLSSSLNHPTITLDLTSNSPSANYPPKFPLDFGSSQYSFMPWNNSNSGYGYGNASQAGHQQFSKSSTPPPPLSSPLPDTIAAATKVITSDPNFHSALAAALSSIIGGGNGSKTAPPMASYVEEPQGNVCASSLSSQQGSMGFEAAKSLSCSTSKSPSSSPGDSRENGK 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 885235 888505 + CmoCh10G001980.1 Cmo10g00198 389544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00198 441 ProSiteProfiles WRKY domain profile. 154 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00198 441 Coils Coil 23 64 - -
Cmo10g00198 441 MobiDBLite consensus disorder prediction 326 340 - -
Cmo10g00198 441 MobiDBLite consensus disorder prediction 326 350 - -
Cmo10g00198 441 MobiDBLite consensus disorder prediction 1 48 - -
Cmo10g00198 441 Pfam WRKY DNA -binding domain 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00198 441 MobiDBLite consensus disorder prediction 416 441 - -
Cmo10g00198 441 SUPERFAMILY WRKY DNA-binding domain 157 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo10g00198 441 MobiDBLite consensus disorder prediction 15 48 - -
Cmo10g00198 441 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 21 114 IPR044810 GO:0003700
Cmo10g00198 441 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 129 437 IPR044810 GO:0003700
Cmo10g00198 441 Gene3D WRKY domain 144 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo10g00198 441 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 129 437 - -
Cmo10g00198 441 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 21 114 - -
Cmo10g00198 441 MobiDBLite consensus disorder prediction 109 147 - -
Cmo10g00198 441 SMART WRKY_cls 159 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00198 Cmo11g00149 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00573 Cmo-Chr3:5582475 Cmo10g00198 Cmo-Chr10:885235 3.12E-50 dispersed
Cmo07g00311 Cmo-Chr7:1500016 Cmo10g00198 Cmo-Chr10:885235 3.29E-50 dispersed
Cmo10g00198 Cmo-Chr10:885235 Cmo11g01889 Cmo-Chr11:13133736 2.35E-61 dispersed
Cmo14g01070 Cmo-Chr14:5890945 Cmo10g00198 Cmo-Chr10:885235 2.71E-27 dispersed
Cmo10g00198 Cmo-Chr10:885235 Cmo11g00149 Cmo-Chr11:752417 1.16E-91 wgd
Cmo10g00198 Cmo-Chr10:885235 Cmo13g00963 Cmo-Chr13:8331688 7.74E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10427 PF03106 WRKY 4.70E-24 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00198 - - cmax:111484813 675.241