Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00203 ATGGAAGGAGGTGATGACCTCCACCACCATCACCACCACCACCGTCCCACCTTCCCATTTCAATTGCTCGAGAAAAAAGACGACGACGCTGCATCTTGCTCCACTTCTCCTTACCCTTCTCTTGCAATCTCTCCCGACCCCACCACCGCCGCCGCCGCCGCCACCGTCTCCGTTGCAGAGCCTTCTTCCAAGAAGCCACCAGCCAAAAGAACCTCCACGAAAGACCGTCATACGAAAGTCGATGGTCGTGGTCGACGCATCCGAATGCCAGCCCTATGTGCAGCTAGGGTATTTCAACTCACACGAGAATTGGGTCATAAGTCCGACGGCGAAACCATCGAGTGGCTCCTTCAACAAGCGGAGCCTGCCGTGATTGCCGCTACCGGAACTGGTACCATCCCGGCTAACTTCACATCCCTCAATATCTCATTACGTAGCTCCGGCTCCACCATGTCTGTTCCTTCGCAGCTTCGGTCATCTTCCTATTACAACCCTAATTTCTCCCTGCATCAACCACGCCGAACGCTCTTCCCGGGATTCGGCCTCTCATCGGAACCCTCCTCCACCGCTCTCCTCAATTTCCAGTCCACCAACATCGGTAACTCTCTACTCCAAGCCAAACCTGAACTCAGAGACAACACTACCTCTTCATTAGACCTCTCGGACGCGGCGGAGGAAATCAGCATAGGGCGGAAGAGAAGACCGTCCACAGAGCAGGAGTTGTCGTCGTCGTCGTCGTCGCAGCATCAAATGGGAGGGTATCTGCTACAGTCAAGTGCAGGGTCGATCCCAGCGAGCCACGGAGGAGGTCAGGTTCCGGCGAATTTTTGGATGCTTACAAATACAAATAACCAAGTGATGGGGGGTGATCCCATATGGACGTTTCCATCCGTTAACAACAGCGGGTTGTACAGAGGGACGATGTCTAGTGGGTTACATTTCATGAACTTCCCAGCCCCAGTCGCGTTAGTGCCAGGTCAGCAATTTGGTTCCGGCGCCGGCGGAGGGAATAATAGTTCCAGTGAGGGACACTTGAACATACTCGCTGGCCTGAATCCGTATCGCTCGGTTTCCACCACCGGCATCATGGAACAACAGGGAAGTGGATCGCACTCACATCACGGCGGCGGTGGAGATGATCGCCATGATTCAACCAGCCACCACTCATAA 1170 54.53 MEGGDDLHHHHHHHRPTFPFQLLEKKDDDAASCSTSPYPSLAISPDPTTAAAAATVSVAEPSSKKPPAKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSSYYNPNFSLHQPRRTLFPGFGLSSEPSSTALLNFQSTNIGNSLLQAKPELRDNTTSSLDLSDAAEEISIGRKRRPSTEQELSSSSSSQHQMGGYLLQSSAGSIPASHGGGQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSGAGGGNNSSSEGHLNILAGLNPYRSVSTTGIMEQQGSGSHSHHGGGGDDRHDSTSHHS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 910288 911457 - CmoCh10G002030.1 Cmo10g00203 389549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00203 389 MobiDBLite consensus disorder prediction 374 389 - -
Cmo10g00203 389 MobiDBLite consensus disorder prediction 29 85 - -
Cmo10g00203 389 MobiDBLite consensus disorder prediction 67 85 - -
Cmo10g00203 389 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 11 388 - -
Cmo10g00203 389 MobiDBLite consensus disorder prediction 363 389 - -
Cmo10g00203 389 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Cmo10g00203 389 MobiDBLite consensus disorder prediction 205 222 - -
Cmo10g00203 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 388 IPR005333 GO:0003700
Cmo10g00203 389 MobiDBLite consensus disorder prediction 205 251 - -
Cmo10g00203 389 Pfam TCP family transcription factor 71 242 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00203 Cmo13g01176 CCT
Cmo10g00203 Cmo13g01176 ECH
Cmo10g00203 Cmo11g00159 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00203 Cmo-Chr10:910288 Cmo18g00812 Cmo-Chr18:9545980 2.15E-39 dispersed
Cmo04g01953 Cmo-Chr4:9996727 Cmo10g00203 Cmo-Chr10:910288 3.67E-47 transposed
Cmo10g00203 Cmo-Chr10:910288 Cmo11g00159 Cmo-Chr11:799344 0 wgd
Cmo10g00203 Cmo-Chr10:910288 Cmo13g01176 Cmo-Chr13:9377630 3.24E-79 wgd
Cmo10g00203 Cmo-Chr10:910288 Cmo18g01183 Cmo-Chr18:11881839 1.05E-92 wgd
Cmo10g00203 Cmo-Chr10:910288 Cmo04g01729 Cmo-Chr4:8756861 1.27E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10428 PF03634 TCP 4.80E-39 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00203 - - csv:101221049 594.734