Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00207 ATGGCAGAAGAAACAATCCCTCAACCGGCTGAAAACAATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAATACAGAGCCCGTAGCAGAACCTAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAATTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGTGGTGGAAAGCACCGCGGTGGCGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGGGGTAGAACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGATTTCCGGATAGCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCGCAAATAATGACTCGTTTTTCGACCCCAAGGACATAGATCCTTTTAGCAGTTTTATATCAGAAGATGGGGGCGTTGGGATTTGGAGTGAATTGGAGAGTGAAGCATTTGGGGTTGAGGAAGGAGGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCTAAAAGAAAGTGCTGCAGAGAAACGAGCAATGGCAGTGGCAGTGCATCAACAAAAGCGTTGTCAAGAGAAGTAATATCGGAGTACTTCTACATGCCCATAACTCAGGCAGCTAAACATCTCAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGGTATAAGAAGATGGCCTCATAGGAAGCTCATGAGCCTACAGACACTAATCAAGAACGAGCTTCAGAAGGAAGATGGAGATCAGGGAGTGAATAAGTTGAGCAATGTATTGAAGATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAGAAAGCTTTCAGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACATGGGGAGGAGGAGGAGGAAGAAGATGATGAAGAAATGAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATGTAA 1533 46.44 MAEETIPQPAENNQEVTNAEDMELENTEPVAEPKGSNDEANEAAKVTNGDANSKREREEESADGSVEEVKKQKMEKSVEEGRVEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGGGGRGGGGGGRGRGGGGGRTDNYSALDWNCNFGFPDSFFDVVPLLESCANNDSFFDPKDIDPFSSFISEDGGVGIWSELESEAFGVEEGGGENGNGGMGNEGTMMRKAKRKCCRETSNGSGSASTKALSREVISEYFYMPITQAAKHLNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNELQKEDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEHGEEEEEEDDEEMKYLLMGCSFSSSIGSPLM 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 926403 931319 + CmoCh10G002070.1 Cmo10g00207 389553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00207 510 MobiDBLite consensus disorder prediction 1 104 - -
Cmo10g00207 510 Gene3D - 95 193 - -
Cmo10g00207 510 ProSiteProfiles RWP-RK domain profile. 333 413 IPR003035 -
Cmo10g00207 510 PANTHER - 11 227 IPR044673 -
Cmo10g00207 510 Pfam Protein of unknown function (DUF3223) 118 190 - -
Cmo10g00207 510 Coils Coil 410 430 - -
Cmo10g00207 510 MobiDBLite consensus disorder prediction 205 234 - -
Cmo10g00207 510 Pfam RWP-RK domain 346 393 IPR003035 -
Cmo10g00207 510 PANTHER PROTEIN EMBRYO DEFECTIVE 514 11 227 - -
Cmo10g00207 510 MobiDBLite consensus disorder prediction 49 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00207 - - - cmax:111484822 429.483
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00207 Cmo11g00165 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00207 Cmo-Chr10:926403 Cmo16g00577 Cmo-Chr16:2791791 5.72E-08 dispersed
Cmo11g00165 Cmo-Chr11:817216 Cmo10g00207 Cmo-Chr10:926403 8.66E-39 transposed
Cmo11g00166 Cmo-Chr11:818859 Cmo10g00207 Cmo-Chr10:926403 6.76E-81 transposed
Cmo18g01356 Cmo-Chr18:12775025 Cmo10g00207 Cmo-Chr10:926403 2.92E-31 transposed
Cmo10g00207 Cmo-Chr10:926403 Cmo11g00164 Cmo-Chr11:816148 1.13E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g556 . . . . . . Bma06g00170 . . . Cma10g00190 Cma11g00144 Car10g00180 Car11g00150 Sed08g0214 . Cpe04g01500 Bhi02g00326 Tan09g2124 Cmetu02g0201 . Hepe09g0121 . . Cla06g01592 Cam06g1765 Cec06g1818 Cco06g1824 Clacu06g1728 Cmu06g1672 Cre06g2488 Cone2ag0844 Cone16ag0171 . . . . . . . . . Bda14g00853 . . . . . Cmo10g00207 Cmo11g00165 . . . . . Cpe18g00795 . . . . . . . . . . . . . . Lsi06g01465 Csa01g00233 Chy02g02499 Cme02g01885
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g00166 CST 74 199 AtRKD Transcription Factor Family AT1G18790 69.7 4.6e-39 159.1
Cmo10g00207 CST 327 458 AtRKD Transcription Factor Family AT1G18790 64.9 3.9e-38 156.0
Cmo10g00207 CST 340 509 AtRKD Transcription Factor Family AT1G74480 54.9 1.1e-36 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006381 1 1 1 1 0 1 3 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10430 PF11523 DUF3223 6.90E-23 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00207 Cmo_Chr10 FPKM 0.430642 0.0 1.107574 0.770792 0.0 0.0 0.0 0.905968 0.866852 0.821201