Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00207 ATGGCAGAAGAAACAATCCCTCAACCGGCTGAAAACAATCAGGAGGTGACCAACGCCGAAGACATGGAATTGGAGAATACAGAGCCCGTAGCAGAACCTAAAGGATCAAATGATGAAGCAAATGAGGCTGCAAAAGTAACTAATGGCGATGCAAATTCGAAGCGGGAGAGGGAGGAAGAAAGCGCCGATGGCAGCGTCGAAGAGGTGAAAAAGCAGAAGATGGAGAAGTCAGTTGAAGAGGGAAGGGTTGAGAAGGCGCAAGGAGACGGGAAGGGAGAGGAGGAGCCTGGTCCTGTGACTATAGGCCCTAAGAGCTTTCGATCGTCGAGGGAATTGTTTGATCACTTCTATAAATTCCTCCACCACTGGCCTGCCTACTTGAACGTGAACCAGTACGAGAAGATGATGTTGCTGGATTTGCTGAAGAAGGGGCATGCAGAACCAGAGAAAAAGATAGGGTGTGGTATTCATTCTTTCCAAATTCGAAACCATCCTATTTGGAAAAACAAGTGCTTCTTCCTCATTCGGGAGGACGAGTCTGTTGATGACTTCAGCTTCAGAAAGTGTGTGGATCATATCCTTCCCCTTCCTGAAAACCTCAAAGGTAGATCTGATGCAAACAAGGCATTCGGTGGTGGAAAGCACCGCGGTGGCGGTGGAGGACGAGGCGGGGGTGGTGGTGGCCGTGGAAGAGGAGGAGGAGGGGGTAGAACCGACAATTATTCTGCGTTGGATTGGAACTGCAATTTTGGATTTCCGGATAGCTTTTTTGACGTTGTTCCTTTGCTTGAGAGTTGCGCAAATAATGACTCGTTTTTCGACCCCAAGGACATAGATCCTTTTAGCAGTTTTATATCAGAAGATGGGGGCGTTGGGATTTGGAGTGAATTGGAGAGTGAAGCATTTGGGGTTGAGGAAGGAGGCGGAGAAAATGGTAATGGAGGGATGGGAAACGAGGGGACGATGATGAGGAAGGCTAAAAGAAAGTGCTGCAGAGAAACGAGCAATGGCAGTGGCAGTGCATCAACAAAAGCGTTGTCAAGAGAAGTAATATCGGAGTACTTCTACATGCCCATAACTCAGGCAGCTAAACATCTCAATGTCGGACTCACTCTGTTGAAGAAGAGATGCAGAGAATTGGGTATAAGAAGATGGCCTCATAGGAAGCTCATGAGCCTACAGACACTAATCAAGAACGAGCTTCAGAAGGAAGATGGAGATCAGGGAGTGAATAAGTTGAGCAATGTATTGAAGATATTAGAGAATGAGAAGAAATTAATGGAGGAGAGACCAGATTTGCAGTTGGAGGACAATACAAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAGAAAGCTTTCAGGAACCAACAATGGCTCCCAGTATTTCTCCATTAATGGTGGAATGATTTGCAGAGATGATCAAGAACATGGGGAGGAGGAGGAGGAAGAAGATGATGAAGAAATGAAATATCTGTTGATGGGTTGCTCGTTTTCGTCGAGTATTGGCAGCCCATTGATGTAA 1533 46.44 MAEETIPQPAENNQEVTNAEDMELENTEPVAEPKGSNDEANEAAKVTNGDANSKREREEESADGSVEEVKKQKMEKSVEEGRVEKAQGDGKGEEEPGPVTIGPKSFRSSRELFDHFYKFLHHWPAYLNVNQYEKMMLLDLLKKGHAEPEKKIGCGIHSFQIRNHPIWKNKCFFLIREDESVDDFSFRKCVDHILPLPENLKGRSDANKAFGGGKHRGGGGGRGGGGGGRGRGGGGGRTDNYSALDWNCNFGFPDSFFDVVPLLESCANNDSFFDPKDIDPFSSFISEDGGVGIWSELESEAFGVEEGGGENGNGGMGNEGTMMRKAKRKCCRETSNGSGSASTKALSREVISEYFYMPITQAAKHLNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNELQKEDGDQGVNKLSNVLKILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGTNNGSQYFSINGGMICRDDQEHGEEEEEEDDEEMKYLLMGCSFSSSIGSPLM 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 926403 931319 + CmoCh10G002070.1 Cmo10g00207 389553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00207 510 MobiDBLite consensus disorder prediction 1 104 - -
Cmo10g00207 510 Gene3D - 95 193 - -
Cmo10g00207 510 ProSiteProfiles RWP-RK domain profile. 333 413 IPR003035 -
Cmo10g00207 510 PANTHER - 11 227 IPR044673 -
Cmo10g00207 510 Pfam Protein of unknown function (DUF3223) 118 190 - -
Cmo10g00207 510 Coils Coil 410 430 - -
Cmo10g00207 510 MobiDBLite consensus disorder prediction 205 234 - -
Cmo10g00207 510 Pfam RWP-RK domain 346 393 IPR003035 -
Cmo10g00207 510 PANTHER PROTEIN EMBRYO DEFECTIVE 514 11 227 - -
Cmo10g00207 510 MobiDBLite consensus disorder prediction 49 92 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00207 Cmo11g00165 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00207 Cmo-Chr10:926403 Cmo16g00577 Cmo-Chr16:2791791 5.72E-08 dispersed
Cmo11g00165 Cmo-Chr11:817216 Cmo10g00207 Cmo-Chr10:926403 8.66E-39 transposed
Cmo11g00166 Cmo-Chr11:818859 Cmo10g00207 Cmo-Chr10:926403 6.76E-81 transposed
Cmo18g01356 Cmo-Chr18:12775025 Cmo10g00207 Cmo-Chr10:926403 2.92E-31 transposed
Cmo10g00207 Cmo-Chr10:926403 Cmo11g00164 Cmo-Chr11:816148 1.13E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10430 PF11523 DUF3223 6.90E-23 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00207 - - cmax:111484822 429.483