Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo10g00208 | ATGACTGTGATCTTCCGGCGATGCCGTTGTTCGGCGGATCGGCATCTTCATTCCCTTCGCCTTCCTCATTTCGCATCCACCGCTTCTCTCCTTCACTCTCCGATCTCTCTGCTTTCTTCCAAATTTCGTGAACAAAACTCAACGCTTCGCTTCGATAGAGAGCCGCTGATTTCTCTCATAAAGTCATGCACCCACAAATCACAATTGCTGCAAATCCATGCCCACATGATCCGCACGTCTTTCATTCAAGACCCCATTGTTTCCCTCCGCTTCTTGACTCGCATCGTTTCCGCGCCTTTTCGCGAATTGGGCTATTCGCGAAGATTCTTCTCTCAGCTGACGAACCCATTTGTTTCTCATTACAATACGCTGTTGAGAGCCTACTCGTTGAGCCGTTCACCTCTGGAGGGATTGTACATGTACAGAGATATGGAGAGGCGAGGTGTTCATGCTGATCCTTTGTCTTCTTCCTTTGCCGTTAAGTCGTGTATAAGAATGCTTTCATTATTTAGTGGGGTTCAGATTCACGCAAGGATCTTTAGAAATGGGCATCAATCGGATAGTCTTTTGCTCACCTCCATGATGGATTTGTATTCTCATTGTGGCAAACTTGAGGATGCATGCAAACTGTTCGATGAAATTCCTCAAAGAGATGTTGTTGCTTGGAACGTTTTGATTTCGTGTCTAACTCGAAATAAACGAACAAGGGATGCTTTGGGTTTGTTTGAGATCATGCAGAGTCCAACGTATCTCTGCAAACCTGATAAAGTTACCTGTTTACTTCTTCTCCAAGCCTGTGCGGACTTGAATGCATTGGAATTTGGCGAAAGGATTCATAGTCATATTCAACAGCACGGTTATAATACCGAGAGTAATTTGTGCAATTCGCTGATATCCATGTATTCGCGGTGTGGACGTGTGGATAAGGCGTATGAAGTGTTTGATAAAATGCCTGAGAAAAATGTTGTTTCGTGGAGTGCGATGATTTCCGGGTTATCGATGAATGGACACGGGAGAGAAGCTATTGAAGCGTTTTGGGCGATGCAAAAGAAGGGTGTTGAGCCTGATGATCATACTTTCACTGCAGTTCTTTCTGCTTGTAGCCATTGTGGGCTGGTTGATGAAGGAATGGCGTTTTTTGATCGTATGAGACAAGAGTTCATGATAGTTCCCACCGTCCATCACTATGGATGTATGGTTGATCTCTTGGGTCGTGCTGGAATGCTCGACCAAGCCTATCAGCTCGTAATGTCAATGGAGGTGAATCCAGATGCGACAATGTGGAGGACCCTTCTTGGAGCTTGCAGAATTCACGGTCATGCAAACCTTGGGGAGCGCATAATTGAGCATTTGATTGAACTCAAATCTCAAGAAGCAGGTGATTATGTGCTGCTGCTGAACATTTATTCTTCGGCTGGGAACTGGGTCAAGGTAACTGAATTGAGGAAATTCATGAAGGAAAGGGGTATCTATACTACACCCGGCTGCACCACAATAGAACTGAATGGGGTGGTGCATGAGTTTGCTGTGGATGATATTTCGCATCCGATGAAGGACAAGATCTACGAGCAGCTGGACGAGATCAACAAGCAGCTAAAGATTGCAGGTTATGAAGCTGAAATATCATCTGAATTACACAACTTAAAGGCAGAAGATAAGGGGTATGCGCTTTCTTTCCATAGTGAGAAATTGGCCATAGCCTTTGGGGTTCTTGCAACCCCGCCAGGAAGAACCATCAGAGTGGCAAACAATCTTCGTACTTGCATGGATTGTCATAACTTTGCTAAATATGTCTCAAGTGTTTATAACCGAAAAGTGGTTGTTAGGGACCGAAGTCGGTTCCATCATTTCCGAGAGGGTCGGTGTTCCTGCAACGATTATTGGTAG | 1887 | 44.99 | MTVIFRRCRCSADRHLHSLRLPHFASTASLLHSPISLLSSKFREQNSTLRFDREPLISLIKSCTHKSQLLQIHAHMIRTSFIQDPIVSLRFLTRIVSAPFRELGYSRRFFSQLTNPFVSHYNTLLRAYSLSRSPLEGLYMYRDMERRGVHADPLSSSFAVKSCIRMLSLFSGVQIHARIFRNGHQSDSLLLTSMMDLYSHCGKLEDACKLFDEIPQRDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCKPDKVTCLLLLQACADLNALEFGERIHSHIQQHGYNTESNLCNSLISMYSRCGRVDKAYEVFDKMPEKNVVSWSAMISGLSMNGHGREAIEAFWAMQKKGVEPDDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIVPTVHHYGCMVDLLGRAGMLDQAYQLVMSMEVNPDATMWRTLLGACRIHGHANLGERIIEHLIELKSQEAGDYVLLLNIYSSAGNWVKVTELRKFMKERGIYTTPGCTTIELNGVVHEFAVDDISHPMKDKIYEQLDEINKQLKIAGYEAEISSELHNLKAEDKGYALSFHSEKLAIAFGVLATPPGRTIRVANNLRTCMDCHNFAKYVSSVYNRKVVVRDRSRFHHFREGRCSCNDYW | 628 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 931570 | 933456 | + | CmoCh10G002080.1 | Cmo10g00208 | 389554 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo10g00208 | 628 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | IPR002885 | - | |
| Cmo10g00208 | 628 | Pfam | E motif | 440 | 500 | IPR046848 | - | |
| Cmo10g00208 | 628 | Gene3D | Tetratricopeptide repeat domain | 273 | 365 | IPR011990 | GO:0005515 | |
| Cmo10g00208 | 628 | Gene3D | Tetratricopeptide repeat domain | 366 | 513 | IPR011990 | GO:0005515 | |
| Cmo10g00208 | 628 | Gene3D | Tetratricopeptide repeat domain | 164 | 272 | IPR011990 | GO:0005515 | |
| Cmo10g00208 | 628 | Pfam | PPR repeat | 295 | 317 | IPR002885 | - | |
| Cmo10g00208 | 628 | TIGRFAM | PPR: pentatricopeptide repeat domain | 192 | 220 | IPR002885 | - | |
| Cmo10g00208 | 628 | TIGRFAM | PPR: pentatricopeptide repeat domain | 358 | 386 | IPR002885 | - | |
| Cmo10g00208 | 628 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 247 | IPR002885 | - | |
| Cmo10g00208 | 628 | TIGRFAM | PPR: pentatricopeptide repeat domain | 121 | 152 | IPR002885 | - | |
| Cmo10g00208 | 628 | TIGRFAM | PPR: pentatricopeptide repeat domain | 323 | 356 | IPR002885 | - | |
| Cmo10g00208 | 628 | TIGRFAM | PPR: pentatricopeptide repeat domain | 293 | 322 | IPR002885 | - | |
| Cmo10g00208 | 628 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 49 | 620 | - | - | |
| Cmo10g00208 | 628 | Pfam | DYW family of nucleic acid deaminases | 536 | 628 | IPR032867 | GO:0008270 | |
| Cmo10g00208 | 628 | PANTHER | OS08G0434000 PROTEIN | 49 | 620 | - | - | |
| Cmo10g00208 | 628 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 321 | 355 | IPR002885 | - | |
| Cmo10g00208 | 628 | Pfam | PPR repeat family | 320 | 368 | IPR002885 | - | |
| Cmo10g00208 | 628 | Pfam | PPR repeat family | 217 | 267 | IPR002885 | - | |
| Cmo10g00208 | 628 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 356 | 386 | IPR002885 | - | |
| Cmo10g00208 | 628 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 117 | 151 | IPR002885 | - | |
| Cmo10g00208 | 628 | Pfam | PPR repeat | 120 | 149 | IPR002885 | - | |
| Cmo10g00208 | 628 | Pfam | PPR repeat | 395 | 420 | IPR002885 | - | |
| Cmo10g00208 | 628 | Gene3D | Tetratricopeptide repeat domain | 40 | 163 | IPR011990 | GO:0005515 | |
| Cmo10g00208 | 628 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 320 | IPR002885 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo10g00208 | - | - | - | mcha:111007242 | 1106.66 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00208 | Cmo11g00166 | CST |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo10g00208 | Cmo-Chr10:931570 | Cmo07g00074 | Cmo-Chr7:470182 | 9.12E-161 | dispersed | |
| Cmo10g00208 | Cmo-Chr10:931570 | Cmo10g00608 | Cmo-Chr10:2749382 | 1.11E-61 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi17g557 | . | . | . | Bda15g00603 | Bpe12g00547 | . | . | . | . | . | Cma10g00191 | Cma11g00143 | Car10g00182 | Car11g00151 | . | . | . | Bhi02g00318 | . | . | . | . | . | . | Cla06g01591 | . | . | . | . | . | . | Cone2ag0843 | . | . | . | . | . | . | . | Blo13g00009 | . | . | . | . | . | . | Bma08g00221 | . | Cmo10g00208 | Cmo11g00166 | . | . | . | . | . | Cpe18g00794 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi06g01463 | Csa01g00234 | Chy02g02498 | Cme02g01884 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0006872 | 1 | 7 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 2 | 1 | 1 | 0 | 1 | 31 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cmo10g00208 | Cmo_Chr10 | FPKM | 11.998142 | 14.663337 | 17.230618 | 18.393333 | 9.839831 | 5.791793 | 10.413809 | 5.142329 | 4.586007 | 6.157542 |