Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00209 ATGGCCTCCGTAGCGCTCAAATCCTTCACTGGACTCCGTCAATCGTCGCCTGAGAAGCCCCATTTCGTCACTCAAACGAAGGCCACCCCGAACCTCCAATTTCGGCGTCGATTTTATGTTTCCGCTGCCAAAACTAGCCCTAAAATCGCCGGCCGCAACCTCAGAGTTGCGGTGGTTGGCGGCGGCCCTGCTGGAGGATCGGCCGCTGAAACTCTCGCCAAGGGTGGCGTTGAGACTTTCCTGTTCGAGCGGAAGCTCGACAACTGTAAGCCTTGCGGTGGGGCGATTCCGCTGTGCATGGTTGGTGAATTCGATCTCCCGTTGGATCTGATTGACCGCCGTGTCACGAAGATGAAGATGATCTCTCCATCGAACGTTGCCGTCGACATCGGCCAGACCTTGAAACCTCACGAGTACATTGGGATGGTTCGGCGAGAGGTTCTGGACGCGTATCTTCGCGAGCGAGCCGCTGAGAATGGAGCTAATGTGATTAATGGCTTAGTCATGAAATTGGACCTTCCGAAGGAACGAAATTCACCATATGTCCTTCACTACACTTCGTACGATGGAAAGAAAGGAGGCGTCGGAGAGAAGAAGACATTGGAGGTTGACGCCGTGATTGGTGCCGACGGAGCCAATTCTCGCGTCGCCAAGGCCATTGACGCCGGCGATTACGATTACGCCATCGCATTTCAGAGTATTGGGGGTTTCCGATTTCAGGAGAGGATCAAAATCCCAGATGACAAAATGGTGTATTACGAGAATCTTGCAGAGATGTACGTAGGTGACGACGTTTCGCCGGATTTTTACGGGTGGGTGTTCCCAAAATGCGACCACGTCGCCGTCGGCACCGGCACCGTGACTCACAAGGCCGATATCAAGAAGTTTCAAATAGCCACACGAAATAGAGCGAGAGACAAGATCTCAGGGGGGAAGATCATCCGAGTTGAAGCACATCCAATCCCAGAGCACCCACGTCCACGAAGACTGGCCGGGAGAGTGGCACTGGTGGGCGATGCAGCCGGGTACGTGACAAAATGCTCTGGCGAGGGCATATATTTCGCAGCGAAGAGCGGGCGAATGTGTGCAGAAGCAATCGTGGAGGGGTCGGAAAACGGGAAGAGAATGGTGGAGGAATCAGACCTGAGGAAGTACTTGGAGAAGTGGGATAAAACCTACTGGCCGACTTATAAGGTTTTGGATGTGTTGCAGAAGGTGTTTTACAGGTCGAATCCGGCGAGGGAAGCTTTTGTGGAGATGTGCGCTGACGAGTATGTGCAGAAGATGACGTTCGACAGTTACTTGTACAAGAGAGTGGTGCCTGGGAACCCATTGGAGGACTTGAAATTGGCTGTCAATACCATCGGAAGCTTGGTGAGAGCCAATGCTCTGAGCAGGGAGATGGACAAAGAACTCTTTTATCCTTTCACTTTGGAACAGTCAGATATGGCAGCAACATCGGCAGCTACTTTGTCCATTGGAGCAACTGCATCACTTAATTCTAAACTCAACTCATTTTCCCAATCAAAATCTGCAGCCTTGAGGGTCAATTCACGAGAGTCTCTTCCAAGCTTCTGCGGCCTCAAGGCAGCTTCTTTTCTTCGATGCGACTCGGAATCATCTTTCCTAGGGAACCAGAGCAGTACCGCCCTATGGCGTCATCTTGCTCCATCAGCTCAAAGAGTGAACCAGAATGTTTATAAAAATCTTCAACCTCAAGCATCTTACAAAGTTGCTGTTCTTGGAGCTGCTGGAGGTATTGGTCAGCCTCTGTCGCTACTCATCAAGATGTCGCCGTTAATTTCGACCCTGAACCTTTATGATATTGCAAATGTCAAGGGTGTTGCTGCTGATATTAGCCACTGTAACACTCCCTCAAAAGTTCAGGCTTTCACTGGACCCTCTGAATTAGCCAATGCTTTAAAAGATGTAGATGTTGTGGTCATACCTGCTGGGGTTCCAAGAAAGCCTGGTATGACTCGTGATGATCTCTTCAACATCAATGCTGGCATAGTGAAAACTTTGGTCGAGGCAGTTGCCGATAATTGTCCCGATGCATTCATTCATATCATTAGCAACCCTGTGAACTCGACTGTGCCAATAGCAGCAGAAGTTCTAAAGCAGAAGGGCGTGTTTGATCCAAAGAAGCTTTTCGGGGTTACTACATTGGATGTTGTCCGGGCAAACACGTTCATCGCTGAAAAGAAGAACCTTAAACTGATCGACGTTGATGTACCGGTTGTTGGGGGGCATGCGGGTATAACAATTCTTCCTTTGCTGTCAAAGACTCGACCTTCAGTGAGCTTTACAGATGAAGAAGTTCAAGCACTGACTGTTAGGATTCAAAATGCGGGAACTGAGGTCGTGGAAGCGAAGGCAGGGGCGGGATCTGCTACCCTTTCAATGGCATATGCTGCAGCAAGATTTGTCGAATCGTCTCTTCGTGCTTTGGATGGAGACAGTGATGTCTATGAGTGCACATTTGTGCAGTCTGATCTAACTGAGCTTCCCTTCTTTGCATCGAGAGTTAAGCTTGGGAGGAAAGGAATTGAAGCCTTTGTAACGTCTGATCTACAGGGTTTAACCGAGTACGAGGAGAAGGCTCTTGAAGCTCTAAAGCCAGAACTGAAGGCAAGCATTGAGAAGGGCATTGCTTTTACACAGAAGCCTTCAGTGGCTGCTTGA 2685 49.65 MASVALKSFTGLRQSSPEKPHFVTQTKATPNLQFRRRFYVSAAKTSPKIAGRNLRVAVVGGGPAGGSAAETLAKGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAAENGANVINGLVMKLDLPKERNSPYVLHYTSYDGKKGGVGEKKTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQSIGGFRFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRARDKISGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALSREMDKELFYPFTLEQSDMAATSAATLSIGATASLNSKLNSFSQSKSAALRVNSRESLPSFCGLKAASFLRCDSESSFLGNQSSTALWRHLAPSAQRVNQNVYKNLQPQASYKVAVLGAAGGIGQPLSLLIKMSPLISTLNLYDIANVKGVAADISHCNTPSKVQAFTGPSELANALKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVFDPKKLFGVTTLDVVRANTFIAEKKNLKLIDVDVPVVGGHAGITILPLLSKTRPSVSFTDEEVQALTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDSDVYECTFVQSDLTELPFFASRVKLGRKGIEAFVTSDLQGLTEYEEKALEALKPELKASIEKGIAFTQKPSVAA 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 934166 938659 - CmoCh10G002090.1 Cmo10g00209 389555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00209 894 Gene3D - 721 892 IPR015955 GO:0003824|GO:0016616
Cmo10g00209 894 Pfam lactate/malate dehydrogenase, NAD binding domain 577 719 IPR001236 GO:0016491
Cmo10g00209 894 TIGRFAM GG-red-SF: geranylgeranyl reductase family 56 366 IPR011777 GO:0016628
Cmo10g00209 894 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 566 720 IPR036291 -
Cmo10g00209 894 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 509 894 - -
Cmo10g00209 894 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 577 887 IPR010097 GO:0006099|GO:0030060
Cmo10g00209 894 Gene3D - 54 473 IPR036188 -
Cmo10g00209 894 MobiDBLite consensus disorder prediction 1 23 - -
Cmo10g00209 894 Gene3D - 574 720 - -
Cmo10g00209 894 MobiDBLite consensus disorder prediction 8 23 - -
Cmo10g00209 894 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 202 217 - -
Cmo10g00209 894 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 55 77 - -
Cmo10g00209 894 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 331 346 - -
Cmo10g00209 894 TIGRFAM BchP-ChlP: geranylgeranyl reductase 55 460 IPR010253 GO:0015979|GO:0015995|GO:0045550
Cmo10g00209 894 SUPERFAMILY LDH C-terminal domain-like 720 887 IPR015955 GO:0003824|GO:0016616
Cmo10g00209 894 CDD MDH_glyoxysomal_mitochondrial 576 886 IPR010097 GO:0006099|GO:0030060
Cmo10g00209 894 TIGRFAM ChlP: geranylgeranyl reductase 54 460 IPR011774 GO:0045550
Cmo10g00209 894 PANTHER MALATE AND LACTATE DEHYDROGENASE 509 894 - -
Cmo10g00209 894 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 721 886 IPR022383 GO:0016616
Cmo10g00209 894 ProSitePatterns Malate dehydrogenase active site signature. 720 732 IPR001252 GO:0006108|GO:0016615
Cmo10g00209 894 SUPERFAMILY FAD/NAD(P)-binding domain 54 444 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00209 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - csv:101221755 876.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00209 Cmo11g00168 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00209 Cmo-Chr10:934166 Cmo16g00450 Cmo-Chr16:2162297 6.05E-136 dispersed
Cmo11g00168 Cmo-Chr11:823871 Cmo10g00209 Cmo-Chr10:934166 0 transposed
Cmo20g00012 Cmo-Chr20:117538 Cmo10g00209 Cmo-Chr10:934166 0 transposed
Cmo10g00209 Cmo-Chr10:934166 Cmo11g00167 Cmo-Chr11:820460 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g559 Blo04g00772 . . . . . . . . . Cma10g00194 . Car10g00184 Car11g00153 Sed08g0217 . Cpe04g01498 Bhi02g00313 Tan09g2119 Cmetu02g1781 . Hepe09g0116 . . . . . . . . . Cone2ag0842 . . . . . . . . . . Bda14g00854 . Bpe15g00600 . . . Cmo10g00209 Cmo11g00168 . . . . . Cpe18g00792 . . . . . . . . . . . . . . . Csa01g00237 Chy02g02495 Cme02g01881
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00209 Cmo_Chr10 FPKM 11.137027 12.326694 9.640314 10.193172 12.048921 10.57242 11.503578 10.264487 9.888101 10.553207