Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00214 ATGGCGTTTCTTGGATTAGTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGTTCATGGCAACAATGGAGGAGGAGGTTGGACTGATGCCCACGCCACGTTCTACGGTGGGGGCGACGCTGCTGGTACAATGGGAGGGGCTTGTGGGTATGGAAACCTATACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGCACAGCCCTATTCAACAATGGACTGAGCTGTGGGGCTTGCTTCGAAATCAAGTGCGTAAATGACGCAAGATGGTGTATTTCAAGCTCCATTGTGGTCACTGCCACCAACTTTTGTCCACCAAACAATGCTCTCCCCAACAACGCCGGCGGCTGGTGTAACCCTCCACAGCACCATTTCGATCTCTCCCAGCCCGTCTTCCAGCAAATCGCCCATTACAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTTTCTTGTCAGAAGAAAGGAGGCATCAGATTCACAATCAACGGCCATTCATACTTCAATTTAGTTCTTATAACCAACGTCGGGGGAGCTGGGGATGTTCATGGAGTGTGGATTAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAACTGGGGCCAGAACTGGCAGAGCAACTCGTATCTGGATGGACAAAGGCTGTCGTTCAAAGTAACCACCGGCGATGGGCGGACGGTGATATCCAACGGCGTAGTGCCAGCTGGGTGGAGATTCGGTCAAACTTTTAGTGGGCTGCAGTTCCCATGA 759 51.91 MAFLGLVLVGLLLSLGCDSVHGNNGGGGWTDAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDARWCISSSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVAYRRVSCQKKGGIRFTINGHSYFNLVLITNVGGAGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLDGQRLSFKVTTGDGRTVISNGVVPAGWRFGQTFSGLQFP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 951009 952446 - CmoCh10G002140.1 Cmo10g00214 389560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00214 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cmo10g00214 252 SMART dpbb_1 64 149 IPR007112 -
Cmo10g00214 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cmo10g00214 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Cmo10g00214 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Cmo10g00214 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Cmo10g00214 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Cmo10g00214 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cmo10g00214 252 Gene3D - 157 251 IPR036749 -
Cmo10g00214 252 PANTHER EXPANSIN-A15 8 251 IPR002963 GO:0009664
Cmo10g00214 252 Gene3D - 16 155 IPR036908 -
Cmo10g00214 252 PANTHER EXPANSIN 8 251 - -
Cmo10g00214 252 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cmo10g00214 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cmo10g00214 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cmo10g00214 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cmo10g00214 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Cmo10g00214 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Cmo10g00214 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00214 Cmo11g00173 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00515 Cmo-Chr1:2473671 Cmo10g00214 Cmo-Chr10:951009 7.22E-134 dispersed
Cmo01g00834 Cmo-Chr1:4452811 Cmo10g00214 Cmo-Chr10:951009 1.04E-112 dispersed
Cmo04g02994 Cmo-Chr4:21096692 Cmo10g00214 Cmo-Chr10:951009 2.51E-126 dispersed
Cmo10g00214 Cmo-Chr10:951009 Cmo15g00178 Cmo-Chr15:811890 5.82E-129 dispersed
Cmo10g00214 Cmo-Chr10:951009 Cmo11g00173 Cmo-Chr11:837883 8.01E-151 wgd
Cmo10g00214 Cmo-Chr10:951009 Cmo18g01159 Cmo-Chr18:11792230 4.18E-127 wgd
Cmo10g00214 Cmo-Chr10:951009 Cmo04g01748 Cmo-Chr4:8826880 6.17E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00214 - K20628 csv:101222936 460.685