Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00217 ATGGGGAAGACTGGTTTGTTTGATCTGGAGAGGCATTTCGCCTTCTATGGCGCTTATCACAGCAACCCAGTCAACATTTTCATTCATTATTTGTACTTCACCCCATCTTTCTACACTATTCCCAAATCCCCTTGTGGGTTTGACCGCGGCCTGGCCTTCAACTTCGGATTTCTTTTCACCTTAATATATGCTGCATCTTATGTGGTCTTCGATAAGAAAGCGGGGTCCAATGCCGCTTTGCCTTGCTTGATTTGTTGGGTTGGAGCAAGCATACTCGCCTTTAGACTTGGTTATTCTCAGACCTGGAAGATAGTACTGACTGCTCAGTTGTTCTGTTGGACCAATCAGTTAATAGACCATGGAGTATTTGAGGTTAGACAGAAACGAGCACCGGCTTTGTTAGACAATCTTGCTCAACCTTTTCTAATGGCTCCATTCTTTGTATTTTTTGAGGTTCTTCAAAGTTTGTTCAAATATGAACCATACCCAGGATTTAGTGCGAGTGTGCAAGCGAAGATAAAAGCAGATATCAAAGAGTGGAAAGAACAGAAGGAAAAGCTGACATAG 567 42.68 MGKTGLFDLERHFAFYGAYHSNPVNIFIHYLYFTPSFYTIPKSPCGFDRGLAFNFGFLFTLIYAASYVVFDKKAGSNAALPCLICWVGASILAFRLGYSQTWKIVLTAQLFCWTNQLIDHGVFEVRQKRAPALLDNLAQPFLMAPFFVFFEVLQSLFKYEPYPGFSASVQAKIKADIKEWKEQKEKLT 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 956719 958027 + CmoCh10G002170.1 Cmo10g00217 389563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00217 188 Pfam 2-hydroxy-palmitic acid dioxygenase Mpo1-like 8 155 IPR009305 -
Cmo10g00217 188 PANTHER DUF962 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_8G05310) 1 187 IPR009305 -
Cmo10g00217 188 PANTHER YGL010W-LIKE PROTEIN 1 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00217 - - - csv:101202902 322.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00217 Cmo13g01196 CCT
Cmo10g00217 Cmo13g01196 ECH
Cmo10g00217 Cmo11g00175 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00836 Cmo-Chr1:4463205 Cmo10g00217 Cmo-Chr10:956719 1.34E-95 wgd
Cmo10g00217 Cmo-Chr10:956719 Cmo11g00175 Cmo-Chr11:844750 9.13E-107 wgd
Cmo10g00217 Cmo-Chr10:956719 Cmo13g01196 Cmo-Chr13:9441324 1.18E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g569 . . . . . . . . Cmo13g01196 . Cma10g00199 Cma11g00136 Car10g00190 Car11g00159 . . Cpe04g01492 . . . . . . . Cla06g01584 Cam06g1752 Cec06g1808 Cco06g1811 Clacu06g1718 Cmu06g1661 Cre06g2475 Cone2ag0837 Cone16ag0177 Cone13ag0064 Cone19ag0066 Lsi02g00084 Csa01g00563 Chy12g01530 Cme12g01979 . . . . . . . Bma08g00231 Sed08g2082 Cmo10g00217 Cmo11g00175 Cma13g01141 . Car13g00972 . . Cpe18g00785 Bhi08g01143 Tan05g2427 Cmetu02g1502 Lac10g0091 Hepe07g2499 . . Cla04g01188 Cam04g1245 Cec01g1756 . Clacu04g1273 Cmu04g1252 Cre01g1545 Lsi06g01456 Csa01g00243 Chy02g02489 Cme02g01873
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001995 2 2 2 2 2 2 4 1 2 2 2 2 3 2 2 4 2 2 2 2 2 3 2 1 1 2 2 5 2 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00217 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0