Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00228 ATGCACCGAGCGATCTGTATATTCGTCCGACAATCACTTCCTAACGCTTGCATCGTCTTCGTTTCTGACGATCTCCATCGTCTCGGCCTTGGGACCTCCGAATGCGAGACGGAGATTACTATTTCCTCAGATAACAAGATGCACAATCCCCCCAAATCTACCATCGTTCTCCGCGCTGCCTCGTGTTATCTTTCCAGCTTGCTCTCTATCACATTTTGGCTACTGAATCTCCCTGGTGAGTTCTGGAAATGGAAAATATGGGCGAGATTGATACGAAACCTATTGATTCTGTACAAGCCGGGGTATGAGAAGGAAAGAGAGGTTCAAGAGTTAGTAAAGGATTTGGCTAATTACAAGGTTCAACTTGAAGCAAAGGATGCAGCTTACATGCAGGCTCTTCTCAAGCTGGAACAACAACAGAAAGCCATCGACGAACTGTCTGAGTTGCTGAAAATTGCGGAAACTGGTAGAGATAAATACGTCAATGAATGCAGCGAAGCTAGATTTCTGCTGGATGAACTTGAACAAAAACTGAACGAAATGACTGAACAATCCTTGGAGACCGAAAAATTCCGAGAGAAACTTCAGGCTGCCGAGAATGAGTTGAAGCTCAGACAAGAGGAGCTTCTTGGGATTGAAACAGAACTTGCTGCCTCTAGAGAATCAGAGGTCAAGGGTATTATAAAAATAGAGTTGCTGGAAAACAAGGCTCACTTGGAAAAGGAGACTACTGTAGATCTCATAAGACGCATTTCAGAACTAAATGAAGCAATTCGTTTGTCAAAATTTGCTGCTAGTGAAGCAGAGAAGGAGATGTCTGCTGCATTATCTGCAAAGGAGACCGAGCTAGAGCTGGCTAAAAAGCAAGTTGTTGAGTTGCACAAGCAATTAGAAGAAATGAGCCAGCAAATAGAAATAGAGATGGAGCGGAATCAATTAAAAGAAGTGAAATTTTCAAATGAAGAAATCGAAAAATTCAAGGACGAGATCGAAACACTTAAGAATCAGTTGGAGAAGAAGAATCTTGAAATGGATGAGATGAGAGAAAGGGAAGCTAATGCGGAGGTTGAGATTGCATTGCTGAAATCTGAGCTTCATAAAGGAAGGTCAAAAGTTGCAGCTGTAGAAGCAGCTGAAGCCAAAGCCAAGAGTGTAACATCTGGTCTTTATCCTGCTGTTCAGGACTTGGCTGCAGAATCAGTCGAAGTTAAGAAGGAGAACATAAAGCTAGAACAGGAACCACTCGGGGCCTATGAAGAAACTGAGAACTCCATACTTGCCAAGCCACTTGTTGAGAGTAACTCTTCAAGCATGGAAGAAGATTTGAATCCTGAAGTCAATGAAAGAAGAAATGAAAGTACCACCATGACAATTACTTTAGAGGAATATCAGTCATCGATTAAGGATATTGACTCAGCCTCTGAACTCTCCTCAGACAAAATTTCCCATCATATCAGTTCGGAGTGCACGGATGAATTGGAAAAGTTGAAGAAGGAACTAGAAGCAGCAAACATAAGAATTGGGGAGTTCAGGTCACGTGCAGAACAGGCTGCCACCAGGGCTGAGATGGCTGAGAAAGCAAAAGAAGCCGTTGAAGACCAGCTGAGAAAATGGCGAGAGCATAAACAAAGGAGAAAGGCTGCTCTTGCTGCCATGAAGGAAGTATCTGCACCGCCAAAATTCAAGCCTCCCATGCATGAAGGCAGCTCCACAACGTACCAGCCTTTAGGTACAATTGTCGAGGGACAAGAATTGCAGAGAGACAGAGAAGTTTTGTTACAGTTGAAATTCTTTTTAGAAAAACACAATCCCATTAAACGAGGAAAATATTCGTTTTGGAATTTGCAGAACTCGCCCTGTTCTTGGTCTGGAATATCCTGCAATCAAATCAATTCCCAAGTGACCGGAATTGACCTTTCAAATGAAGATATTTCCGGCACAATTTTTCATAATTTCTCTGCCTTTCCGGCGCTAACGGACCTCGACCTCTCTAGAAACACTCTCTCTGGTCTAATTCCCGGCGACTTGAACAACTGCAGAAATCTCCGGCGGTTGAATTTGTCGCACAACATCATCGATGACAAGTTGAACTTGTCGGGGTTGGTCAATATCGAGACTCTGGATTTGTCGGTCAACCGGATTTGGGGAGACATACGGTTGAATTTTCCGGGCATTTGCAGAAATTTGATGTTCTTTAATGTTTCCGGTAATAATTTCACTGGTCGGACGGATGACTGTTTTGACGAATGCCGGAATTTGCAGCATGTGGATTTGAGCTCCAACAGATTCAATGGTGGATTGTGGGGTGGGTTGACGAGGACTCGTTTTTTCTCAGCGTCGGAGAATGAACTTTCCGGCGAGCTATCGCCGGCGATATTTACTGGGGTTTGTAATTTGGAGGTGTTGGACCTGTCAGAGAATAAATTTTCCGGCGGAGTTCCAGTGGAGGTTTCTAATTGTGGGAATTTGTCTTCTTTGAATCTATGGGGGAACCAATTTTCCGGCACAATTCCGGTTGAAATCGGACGAATTTCGGGTTTGCAGAATTTATATCTGGGAAAGAACAATTTTTCCCGGGAAATTCCTGAATCCCTTTTAAGTTTGAACAACTTGGTGTTCCTCGATTTGAGCAAGAACAATTTCGGAGGGGACATTCAAGAAATCTTCGGGAGGTTCACACAGGTGAGATTCCTTGTTCTTCATGGGAATTCTTACACCGGAGGGATTTATTCTTCTGGGATTCTTAAGCTCCCAAGAGTTGCTCGTTTGGATCTGAGTTTCAACAACTTTTCAGGTTCATTGCCTGTAGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAACAAGTTCAATGGAATGATTCCATCAGAATATGGGAACTTGCAGAATCTTCAAGCTCTTGATCTCTCATTCAACAACTTAAATGGATCAATCCCAAGTAGCTTTGGGAACTTGACTTCACTTTTGTGGCTAATGCTGGCAAACAACTCCTTGACTGGTGAAATTCCCAGGGAGCTTGGTAATTGTTCTAGCTTGTTATGGCTGAATCTTGCGAATAATAAGCTACATGGGCGCATCCCGTCCGAGCTTTCGAACATTGGAAAGAATGCCACGGCGACATTCGAAATGAATCGACGAACCGAAAAGTTCATTGCTGGATCGGGGGAGTGCTTGGCTATGAAGAGATGGATACCAGCAGACTACCCTCCTTTCAGATTTGTTTACACAATTCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTGAAAGGGTATGGCCTTTTCCCATTTTGCAGCAGAATTAGAACACTGCAAATCTCTGGTTATGTTCAGCTCACTGGGAATCAGTTCAGTGGTGAGATACCAAATGAGATTGGAACGATGAAGAACTTCAGTATGTTGCATTTGAGTTGCAACAATTTCAGTGGGAAACTCCCTCCACAGTTGGGGAATCTGCCACTGGTTGTTCTAAACGTCTCGGAAAATCATTTTTCGGGCGAGATCCCGACCGAGATCGGAGGCCTGAAGTGCTTGCAGAACCTTGATTTATCATACAACAACTTCTCTGGCATGTTCCCTAGAAGTTTCTTAAACTTGAATGAGCTTAACAAATTCAACATTTCATATAATCCTCTCATAACTGGTGAAGTCATTCCAAGTGGGCAATTCTCAACGTTTGACAAGGACTCATATCTTGGCAATCCTCTTTTGCGCCTACCATCGTTCTTCAACATAACACCGCCGAAGTCACCTGCCAACCCAAGAATGGCAGGATCATCCAAAAGGAACTCGACGCTAATTGGGATGTTGGCTTCCTTATCATTGATCCTTGCTTTCCTAATATTTGGTGCATTTTCTCTTATCGTGTTCTTAATGGTGAGGAACTCGGATGAATCACGAGGATATCTGTTGGACGATATAAAATATATGAAAGACTTTGGCTCGAGTTCTCCCAGCTCATCGCTGTGGTTTTCGGATTCAGTAACGGTGATTCGACTTGACAAAACGGTTTTTACGTATGCTGATATTCTAAAAGCCACAGGAAACTTTTCAGAGGATAGGGTGATTGGTAAAGGAGGATATGGAACAGTTTACAGAGGAATGTTACCTGATGGAAGGCAAGTGGCAGTGAAGAAGCTCCAGAGAGAAGGGAATGAAGGTGAAAGAGAGTTCCAAGCTGAAATGAAGATTCTTACTGGAAATGGCTTCAACTGGCCGCACCCGAACCTTGTTCAACTTTACGGATGGTGTCTTGATGGGTCGGAGAAGATTTTGGTGTATGAGTACATGGAAGGAGGGAGCTTGGAAGATCTCATAGTAGACAGACTTAGACTAAACTGGCAGCGACGTATCGATCTTGCGATCGATGTGGCACGAGCATTGGTATTTCTGCATCACGAGTGCTTTCCTTCTATTGTGCATCGTGATGTGAAGGCGAGTAATGTTCTGCTTGATAAAGACGGTCGAGGACGGGTGACAGACTTCGGGTTGGCTAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCTGGAACCATTGGTTACGTAGCACCCGAGTATGGACAGACATGGAAAGCTACGACAAAGGGCGATGTGTATAGTTTTGGAGTTTTGGCAATGGAACTTGCAACTGCAAGACGAGCACTGGATGGAGGGGAAGAGTGTCTAGTTGAATGGGCTAAAAGGGTGATGGGAAATGGGAGACATGGGTTGAGTAGAGCAGTGATACCAGTGGCAGTTTTGGGGTCGGGGCTCGTCGACGGGGCGGACGAGATGTGTGAGCTACTGAAGATTGGGGTGAGGTGCACGAACGAAGCACCAGGGGCGAGACCGAACATGAAGGAAGTGCTAGCTATGTTGATCAATATCATAGGGTTAAGAGGGGGAGATGAATTCAGCCAAATGTTCTCCACTACTCCATGCATTGATCAAGATTTTGATTGA 4971 44.0 MHRAICIFVRQSLPNACIVFVSDDLHRLGLGTSECETEITISSDNKMHNPPKSTIVLRAASCYLSSLLSITFWLLNLPGEFWKWKIWARLIRNLLILYKPGYEKEREVQELVKDLANYKVQLEAKDAAYMQALLKLEQQQKAIDELSELLKIAETGRDKYVNECSEARFLLDELEQKLNEMTEQSLETEKFREKLQAAENELKLRQEELLGIETELAASRESEVKGIIKIELLENKAHLEKETTVDLIRRISELNEAIRLSKFAASEAEKEMSAALSAKETELELAKKQVVELHKQLEEMSQQIEIEMERNQLKEVKFSNEEIEKFKDEIETLKNQLEKKNLEMDEMREREANAEVEIALLKSELHKGRSKVAAVEAAEAKAKSVTSGLYPAVQDLAAESVEVKKENIKLEQEPLGAYEETENSILAKPLVESNSSSMEEDLNPEVNERRNESTTMTITLEEYQSSIKDIDSASELSSDKISHHISSECTDELEKLKKELEAANIRIGEFRSRAEQAATRAEMAEKAKEAVEDQLRKWREHKQRRKAALAAMKEVSAPPKFKPPMHEGSSTTYQPLGTIVEGQELQRDREVLLQLKFFLEKHNPIKRGKYSFWNLQNSPCSWSGISCNQINSQVTGIDLSNEDISGTIFHNFSAFPALTDLDLSRNTLSGLIPGDLNNCRNLRRLNLSHNIIDDKLNLSGLVNIETLDLSVNRIWGDIRLNFPGICRNLMFFNVSGNNFTGRTDDCFDECRNLQHVDLSSNRFNGGLWGGLTRTRFFSASENELSGELSPAIFTGVCNLEVLDLSENKFSGGVPVEVSNCGNLSSLNLWGNQFSGTIPVEIGRISGLQNLYLGKNNFSREIPESLLSLNNLVFLDLSKNNFGGDIQEIFGRFTQVRFLVLHGNSYTGGIYSSGILKLPRVARLDLSFNNFSGSLPVEISEMKSLEFLILAYNKFNGMIPSEYGNLQNLQALDLSFNNLNGSIPSSFGNLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLHGRIPSELSNIGKNATATFEMNRRTEKFIAGSGECLAMKRWIPADYPPFRFVYTILTRKSCRSIWDRLLKGYGLFPFCSRIRTLQISGYVQLTGNQFSGEIPNEIGTMKNFSMLHLSCNNFSGKLPPQLGNLPLVVLNVSENHFSGEIPTEIGGLKCLQNLDLSYNNFSGMFPRSFLNLNELNKFNISYNPLITGEVIPSGQFSTFDKDSYLGNPLLRLPSFFNITPPKSPANPRMAGSSKRNSTLIGMLASLSLILAFLIFGAFSLIVFLMVRNSDESRGYLLDDIKYMKDFGSSSPSSSLWFSDSVTVIRLDKTVFTYADILKATGNFSEDRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGNEGEREFQAEMKILTGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLEDLIVDRLRLNWQRRIDLAIDVARALVFLHHECFPSIVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGVLAMELATARRALDGGEECLVEWAKRVMGNGRHGLSRAVIPVAVLGSGLVDGADEMCELLKIGVRCTNEAPGARPNMKEVLAMLINIIGLRGGDEFSQMFSTTPCIDQDFD 1656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1003093 1014231 + CmoCh10G002280.1 Cmo10g00228 389574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00228 1656 Coils Coil 486 541 - -
Cmo10g00228 1656 Coils Coil 393 413 - -
Cmo10g00228 1656 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 574 1639 - -
Cmo10g00228 1656 Pfam Leucine rich repeat 635 690 IPR001611 GO:0005515
Cmo10g00228 1656 Pfam Leucine rich repeat 967 1026 IPR001611 GO:0005515
Cmo10g00228 1656 Coils Coil 316 364 - -
Cmo10g00228 1656 Gene3D Ribonuclease Inhibitor 913 1064 IPR032675 -
Cmo10g00228 1656 Gene3D Ribonuclease Inhibitor 768 912 IPR032675 -
Cmo10g00228 1656 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 574 1639 - -
Cmo10g00228 1656 Gene3D Ribonuclease Inhibitor 584 767 IPR032675 -
Cmo10g00228 1656 SUPERFAMILY Protein kinase-like (PK-like) 1337 1629 IPR011009 -
Cmo10g00228 1656 Coils Coil 269 314 - -
Cmo10g00228 1656 SUPERFAMILY L domain-like 770 1033 - -
Cmo10g00228 1656 Gene3D Ribonuclease Inhibitor 1098 1253 IPR032675 -
Cmo10g00228 1656 ProSiteProfiles Leucine-rich repeat profile. 681 702 IPR001611 GO:0005515
Cmo10g00228 1656 MobiDBLite consensus disorder prediction 431 450 - -
Cmo10g00228 1656 Gene3D Transferase(Phosphotransferase) domain 1 1436 1637 - -
Cmo10g00228 1656 ProSiteProfiles Protein kinase domain profile. 1356 1632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00228 1656 SMART LRR_typ_2 844 868 IPR003591 -
Cmo10g00228 1656 SMART LRR_typ_2 965 988 IPR003591 -
Cmo10g00228 1656 SMART LRR_typ_2 796 820 IPR003591 -
Cmo10g00228 1656 SMART LRR_typ_2 989 1013 IPR003591 -
Cmo10g00228 1656 SMART LRR_typ_2 917 941 IPR003591 -
Cmo10g00228 1656 SMART LRR_typ_2 655 678 IPR003591 -
Cmo10g00228 1656 SMART LRR_typ_2 1181 1204 IPR003591 -
Cmo10g00228 1656 Pfam Leucine rich repeat N-terminal domain 586 628 IPR013210 -
Cmo10g00228 1656 ProSitePatterns Protein kinases ATP-binding region signature. 1362 1385 IPR017441 GO:0005524
Cmo10g00228 1656 PRINTS Leucine-rich repeat signature 658 671 - -
Cmo10g00228 1656 PRINTS Leucine-rich repeat signature 965 978 - -
Cmo10g00228 1656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1478 1490 IPR008271 GO:0004672|GO:0006468
Cmo10g00228 1656 Coils Coil 108 215 - -
Cmo10g00228 1656 CDD STKc_IRAK 1362 1632 - -
Cmo10g00228 1656 Gene3D Phosphorylase Kinase; domain 1 1325 1435 - -
Cmo10g00228 1656 SMART serkin_6 1356 1633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00228 1656 SUPERFAMILY L domain-like 1106 1220 - -
Cmo10g00228 1656 SUPERFAMILY RNI-like 622 839 - -
Cmo10g00228 1656 Pfam Protein kinase domain 1357 1559 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00228 - - - cmax:111484984 2098.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00228 Cmo-Chr10:1003093 Cmo07g00789 Cmo-Chr7:3611442 9.59E-153 dispersed
Cmo10g00228 Cmo-Chr10:1003093 Cmo04g02248 Cmo-Chr4:16807180 9.31E-152 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g597 . . . . . . . . . . Cma10g00210 . Car10g00197 . . . . Bhi02g00288 . . . . . . Cla06g01567 Cam06g1733 Cec06g1793 Cco06g1793 Clacu06g1700 Cmu06g1646 Cre06g2457 . . . . . . . . . . . Bda14g00863 . Bpe15g00592 Bma03g00841 . . Cmo10g00228 . . . . . . Cpe18g00779 . . . . . . . . . . . . . . Lsi06g01442 Csa01g00263 Chy02g02470 Cme02g01858
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74598 PF00069 Pkinase 1.90E-42 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00228 Cmo_Chr10 FPKM 24.676575 25.47187 29.86474 29.041882 27.205713 25.956642 29.463957 41.467045 43.6633 49.970638