Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00232 ATGTTCCCATATGTTCTTCTCTGTGCTGTGTATTCTTCTACTCCGAGTTGTGGAGCTAAATCGTCGTTCTTGCATTCTGAAGAAATGTCACACTTTAGGAAATCCCCCATACGTTTTGCTAGGCACGGCTCATCCCAACCTGCTAATCCTGCTCGTTCCACTTCACAACCAATTGATTCCAATGATAATTTAGACAAGAGGCAAAAACACAAGTCCTCAAGAATCACCTCTTCTCATCAAGCAACTGTAGCACCTAATCCTAGCTCCAACCTTTTCGATGATCATCTCGAGAAAGAGACCGATTCTTCTTCACATTCTTCATATTCATGGTCATCAAGAAACAGATACAAGAATGATTTCAGGGACTCTGGTGGGCTTCAGAGTCAGACAGTGGAGGAGTTGGAGAATTATGCTGCTTACAAGGCTGAGGAGACAACTAACGCAGTCAACAACTGCCTGAAGATTGCTGAAGATATGAGAGAAGATGCAACCAATACCTTAGTTGCTCTCCATCATCAGGGTGAGCAAATCACTCGCACCCACATGGTTACTGCCGATATCGACAACGACCTTAGTCGGGGTGAGAAACTTCTAGGAAGCTTAGGAGGAATATTCTCCAAGACTTGGAAGCCAAAGAAGGGTCGTCAGATAACAGGCCCCGTTATCTTTGAAGGCGATCAGGCTGTGATAAGCAAGGGCAACCATTTGGAGCAAAGGGAGAGGTTGGGGTTAAGTCGGGCACCCAACCCACGGTCCTCGCGCGCCCCACATCCTGAGCCAACCAACTCACTTCAGAAAGTTGAGGTGGAAAAGGTGAAACAAGAGGATGCTCTTTCAGATTTGAGCAATATATTGGGAGAGCTTAAAGGAATGGCTGTTGATATGGGAACTGAACTAGACAGACAAAATAAGGCTCTGGATAACTTGTTTGACGACGCGGACGAGATCACGGTTCGTGTTGATAATGCTAATCGGCGTGCTCGGCACTTGCTTAGAAATTTTAAGCTTTCAAACCTGCTTGATCATCCTCAGATTGGTCTTCTGCTTCTTGAGTCTTTGTCCATTGTTGCCCATTTTGCTCTGTTCCATCCTGAGAATCAACAAGTTCTTCGCGGGGGAAAGAGCCCTACCATACTCTACAAGGTGTGCGACCTGCCGTTCGTGTTCTTCAGCGACCCCGAACTGATGCCAGTGTTGGCTAGTACCCTGGTTGCTGCTTGTTACGGTGTCAGCTGTGCAATCCAATTCAACACAAGAACGATGAATCAAATGAATGTAACCCAAATGGTGTTGAGTCTCCCAGTAGGAAGGCCGACACTACATAAGCAGCCATCCATCCAGGAAGAAGCAAGCTACCTTTCTTTGATTCACCTTCTCGGGCAGGGAAGAGAACGAAAATAG 1401 46.4 MFPYVLLCAVYSSTPSCGAKSSFLHSEEMSHFRKSPIRFARHGSSQPANPARSTSQPIDSNDNLDKRQKHKSSRITSSHQATVAPNPSSNLFDDHLEKETDSSSHSSYSWSSRNRYKNDFRDSGGLQSQTVEELENYAAYKAEETTNAVNNCLKIAEDMREDATNTLVALHHQGEQITRTHMVTADIDNDLSRGEKLLGSLGGIFSKTWKPKKGRQITGPVIFEGDQAVISKGNHLEQRERLGLSRAPNPRSSRAPHPEPTNSLQKVEVEKVKQEDALSDLSNILGELKGMAVDMGTELDRQNKALDNLFDDADEITVRVDNANRRARHLLRNFKLSNLLDHPQIGLLLLESLSIVAHFALFHPENQQVLRGGKSPTILYKVCDLPFVFFSDPELMPVLASTLVAACYGVSCAIQFNTRTMNQMNVTQMVLSLPVGRPTLHKQPSIQEEASYLSLIHLLGQGRERK 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1040713 1045946 - CmoCh10G002320.1 Cmo10g00232 389578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00232 466 Coils Coil 306 333 - -
Cmo10g00232 466 MobiDBLite consensus disorder prediction 46 61 - -
Cmo10g00232 466 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 51 332 - -
Cmo10g00232 466 Gene3D - 253 333 - -
Cmo10g00232 466 SMART tSNARE_6 134 201 IPR000727 -
Cmo10g00232 466 SMART tSNARE_6 263 330 IPR000727 -
Cmo10g00232 466 SUPERFAMILY SNARE fusion complex 129 199 - -
Cmo10g00232 466 CDD SNARE_SNAP25N_23N_29N_SEC9N 136 200 IPR044766 GO:0005484|GO:0031201
Cmo10g00232 466 CDD SNARE_Qc 273 329 - -
Cmo10g00232 466 MobiDBLite consensus disorder prediction 40 114 - -
Cmo10g00232 466 Coils Coil 264 284 - -
Cmo10g00232 466 MobiDBLite consensus disorder prediction 75 89 - -
Cmo10g00232 466 MobiDBLite consensus disorder prediction 234 264 - -
Cmo10g00232 466 Gene3D - 125 202 - -
Cmo10g00232 466 SUPERFAMILY SNARE fusion complex 269 331 - -
Cmo10g00232 466 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 51 332 - -
Cmo10g00232 466 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 273 330 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00232 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101205328 512.686
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00232 Cmo13g01138 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00232 Cmo-Chr10:1040713 Cmo11g00198 Cmo-Chr11:969638 1.14E-147 dispersed
Cmo01g00857 Cmo-Chr1:4552532 Cmo10g00232 Cmo-Chr10:1040713 6.88E-105 wgd
Cmo10g00232 Cmo-Chr10:1040713 Cmo11g00195 Cmo-Chr11:948200 3.37E-27 wgd
Cmo10g00232 Cmo-Chr10:1040713 Cmo18g01136 Cmo-Chr18:11656051 6.08E-103 wgd
Cmo10g00232 Cmo-Chr10:1040713 Cmo04g01776 Cmo-Chr4:8950322 2.81E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g617 Blo04g00786 . . . . . . . Cmo13g01138 . . . Car10g00205 . . . Cpe04g01473 . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g00867 . . Bma03g00844 . . Cmo10g00232 . Cma13g01086 . Car13g00924 . . Cpe18g00772 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001344 1 5 1 1 1 2 4 2 2 2 1 2 4 2 2 4 2 4 4 2 2 4 2 2 2 2 2 6 4 1 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00232 Cmo_Chr10 FPKM 5.886045 6.654335 13.083052 14.563123 27.199072 26.872393 28.612173 11.775602 10.929494 10.620166