Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00238 ATGGTGAAGATCTGCTGCATTGGAGCTGGGTATGTCGGTGGGCCTACGATGGCAGTGATAGCATCAAAATGCCCCACAATTGAAGTAGTAGTTGTTGACATCTCTGTTTCCAAGATCTTAGCCTGGAATAGTGAACAACTCCCCATATATGAGCCCGGTCTTGATGATGTAGTGAAGCAGTGCAGAGGAAAGAACCTATTTTTCAGCACAGATGTTGAAAGGCACGTCTCAGAGGCTGACATAATCTTTGTTTCAGTCAATACTCCAACAAAAACTCGAGGCCTTGGAGCTGGCAAAGCTGCAGATCTCACATATTGGGAGAGTGCAGCCCGAATGATTGCCGATGTATCAAAATCAGATAAGATTGTTGTTGAAAAATCAACTGTTCCTGTAAAAACAGCAGAAGCAATAGAAAAGATTCTTATCCACAACAGCAAGGGAATCAAATATCAGATTCTCTCAAATCCAGAGTTCCTTGCTGAGGGTACTGCAATTAAAGATTTATTTAACCCTGACCGGGTTCTCATAGGAGGGAGAGAAACTCCGGATGGTCTCAAGGCAGTTCAGGCTTTGAAGAGTGTATATGCGCAGTGGGTGCCCGAAGAAAGAATTATCACCACCAATCTGTGGTCAGCAGAGCTATCAAAGTTAGCTGCCAATGCACTTTTGGCTCAAAGGATCTCATCTATCAATGCAATGTCAGCACTCTGTGAGGCTACTGGTGCAGATGTGTCACAGGTATCCCATGCCATTGGAACAGATACTAGAATCGGACCCAAGTTCCTCAATGCAAGTGTTGGTTTTGGTGGATCATGTTTTCAGAAAGACATTCTCAATTTGATTTATATTTGTGAATGCAATGGCTTGAATCAAGCTGCTAGCTACTGGAAACAAGTGATCAAGGTCAACGACTACCAAAAGAACCGATTCGTAAACCGGGTTGTCTCTTCAATGTTCAATACAGTTTCAGGCAAAAAGATAGCGATTCTCGGGTTTGCTTTCAAGAAGGATACAGGTGACACAAGGGAAACTCCTGCGATTAGTGTCTGCCAGGGACTTTTGGGGGACAAGGCAAAACTCAGTATATATGACCCACAAGTAACTGAGGATCAGATTCAAAGGGACTTATCTATGAACAAGTTTGATTGGGACCATCCAATCCACTTGCAGCCAGTGAGCCCAACTGCGGCAAAGGAAGTCAGTTTTGCTTGGGACCCCTATGAGGCAACTAAAGATGCTCATGCAGTCTGCATTCTTACTGAATGGGATGAATTCAAGACTCTTGATTTCCAAAGGATTTTTGAACAAATGCAGAAACCTGCATTTGTTTTTGATGGCAGAAATGTTGTTGATGTTCAAAAGCTGAGGGAGATTGGATTCATAGTCTATTCCATTGGAAAACCACTGGATCCATGGCTCAAGGATATGCCTGTTATGGCATAG 1443 43.31 MVKICCIGAGYVGGPTMAVIASKCPTIEVVVVDISVSKILAWNSEQLPIYEPGLDDVVKQCRGKNLFFSTDVERHVSEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILIHNSKGIKYQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPDGLKAVQALKSVYAQWVPEERIITTNLWSAELSKLAANALLAQRISSINAMSALCEATGADVSQVSHAIGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLNQAASYWKQVIKVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAISVCQGLLGDKAKLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPVSPTAAKEVSFAWDPYEATKDAHAVCILTEWDEFKTLDFQRIFEQMQKPAFVFDGRNVVDVQKLREIGFIVYSIGKPLDPWLKDMPVMA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1069558 1071000 - CmoCh10G002380.1 Cmo10g00238 389584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00238 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 1 479 - -
Cmo10g00238 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Cmo10g00238 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 184 IPR001732 GO:0016616|GO:0051287
Cmo10g00238 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Cmo10g00238 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 479 IPR028356 GO:0003979
Cmo10g00238 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Cmo10g00238 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Cmo10g00238 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Cmo10g00238 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Cmo10g00238 480 Gene3D - 241 476 - -
Cmo10g00238 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Cmo10g00238 480 PIRSF UDPglc_DH_euk 1 479 IPR028356 GO:0003979
Cmo10g00238 480 Gene3D - 1 208 - -
Cmo10g00238 480 Gene3D - 209 240 - -
Cmo10g00238 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 202 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00238 K00012 UGDH, ugd; UDPglucose 6-dehydrogenase [EC:1.1.1.22] - csv:101206505 930.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00238 Cmo-Chr10:1069558 Cmo14g01132 Cmo-Chr14:7978021 0 dispersed
Cmo10g00238 Cmo-Chr10:1069558 Cmo01g00491 Cmo-Chr1:2371488 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g626 . . . . . . . . . . Cma10g00227 . Car10g00212 . . . . . . . . . . . Cla06g01552 Cam06g1713 Cec06g1774 Cco06g1775 Clacu06g1681 Cmu06g1626 Cre06g2439 . . Cone2ag0525 Cone16ag0488 . . . . . . . . . . . . . Cmo10g00238 . . . . . . Cpe18g00766 . . . . . . . . . . . . . . Lsi06g01426 Csa01g00279 Chy02g02454 Cme02g01842
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000749 3 5 3 2 3 4 3 4 4 3 3 4 3 3 3 3 4 5 3 4 4 2 2 3 3 3 2 2 3 2 95
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00238 Cmo_Chr10 FPKM 1.144279 1.614793 0.664038 0.128696 11.275476 14.018149 14.530348 0.177632 0.406104 0.317209