Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00243 | ATGGCGGATTTCCCTCCCCACTTCCAGACCTTCATCTCCCCTCATTCAATGGACGATCCTAGTCTCCACCTCCTCCCTCCTCCCTACTCTGTTCCACCCAACCCACCTCCCAATTTCACCAACTTCTTCCCATTCTCCGGCGACCCCTTCTTCCCCCACCAACCGCCACCGCAGTTTCCACCACCAAATCCGCCCGAACCCACCTCCAGCTTCCCACTTTTTCCCTCCCAAACTGCTCCCCCACCACCACTCTCTGAATTCCACGACATCAAGAAGAGAAAATCCATGGATGTTTCAGAAAGCAGCTCTGGAATCTCAACTCCCCAACTCTCTGAAACAGGGTTCAACACAAAACAAAATTCAAGAAAAGGGAAGAGACTGAAAAGAACAGAGATAGAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTTCATGTTAGAGCAAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGCAAAATCAATGAACGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCGGTCATGTTGGATGAGATAATTAATTATGTTCAATCTCTGCAGAATCAAGTAGAGTTCCTGTCTATGAAACTGGCTGCAGCTAGCTCTTTGTATGACTTCAACTCGGAGGTCGATGCCATATCAAAACTACAGAGAGCGAAGGCACATGAAGCAAAAGAAGAACTGGAGAGATTGATGAGAGACGGATATGGAGGAATAGGTTGCTTCCACTCAAATTTGCCCCTTTGA | 792 | 47.47 | MADFPPHFQTFISPHSMDDPSLHLLPPPYSVPPNPPPNFTNFFPFSGDPFFPHQPPPQFPPPNPPEPTSSFPLFPSQTAPPPPLSEFHDIKKRKSMDVSESSSGISTPQLSETGFNTKQNSRKGKRLKRTEIEEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLYDFNSEVDAISKLQRAKAHEAKEELERLMRDGYGGIGCFHSNLPL | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1081086 | 1082595 | + | CmoCh10G002430.1 | Cmo10g00243 | 389589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00243 | 263 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 4 | 262 | IPR024097 | GO:0006355 | |
Cmo10g00243 | 263 | Coils | Coil | 198 | 218 | - | - | |
Cmo10g00243 | 263 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 149 | 219 | IPR036638 | GO:0046983 | |
Cmo10g00243 | 263 | CDD | bHLH_AtBPE_like | 141 | 224 | - | - | |
Cmo10g00243 | 263 | MobiDBLite | consensus disorder prediction | 26 | 135 | - | - | |
Cmo10g00243 | 263 | Gene3D | - | 147 | 220 | IPR036638 | GO:0046983 | |
Cmo10g00243 | 263 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 151 | 201 | IPR011598 | GO:0046983 | |
Cmo10g00243 | 263 | MobiDBLite | consensus disorder prediction | 99 | 120 | - | - | |
Cmo10g00243 | 263 | MobiDBLite | consensus disorder prediction | 26 | 42 | - | - | |
Cmo10g00243 | 263 | Pfam | Helix-loop-helix DNA-binding domain | 155 | 202 | IPR011598 | GO:0046983 | |
Cmo10g00243 | 263 | SMART | finulus | 157 | 207 | IPR011598 | GO:0046983 | |
Cmo10g00243 | 263 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 4 | 262 | - | - | |
Cmo10g00243 | 263 | Coils | Coil | 229 | 249 | - | - | |
Cmo10g00243 | 263 | MobiDBLite | consensus disorder prediction | 49 | 82 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00243 | Cmo13g01064 | CCT | |
Cmo10g00243 | Cmo18g00036 | CCT | |
Cmo10g00243 | Cmo13g01064 | ECH | |
Cmo10g00243 | Cmo18g00036 | ECH | |
Cmo10g00243 | Cmo11g00282 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00243 | Cmo-Chr10:1081086 | Cmo18g00036 | Cmo-Chr18:213740 | 4.56E-64 | dispersed | |
Cmo10g00243 | Cmo-Chr10:1081086 | Cmo11g00282 | Cmo-Chr11:1371030 | 6.34E-87 | wgd | |
Cmo10g00243 | Cmo-Chr10:1081086 | Cmo13g01064 | Cmo-Chr13:8842441 | 1.52E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10436 | PF00010 | HLH | 4.50E-05 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00243 | - | - | csv:101209353 | 305.449 |