Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00243 ATGGCGGATTTCCCTCCCCACTTCCAGACCTTCATCTCCCCTCATTCAATGGACGATCCTAGTCTCCACCTCCTCCCTCCTCCCTACTCTGTTCCACCCAACCCACCTCCCAATTTCACCAACTTCTTCCCATTCTCCGGCGACCCCTTCTTCCCCCACCAACCGCCACCGCAGTTTCCACCACCAAATCCGCCCGAACCCACCTCCAGCTTCCCACTTTTTCCCTCCCAAACTGCTCCCCCACCACCACTCTCTGAATTCCACGACATCAAGAAGAGAAAATCCATGGATGTTTCAGAAAGCAGCTCTGGAATCTCAACTCCCCAACTCTCTGAAACAGGGTTCAACACAAAACAAAATTCAAGAAAAGGGAAGAGACTGAAAAGAACAGAGATAGAAGAAGAAGAGAAATCAAGAAGAGAAGTGGTTCATGTTAGAGCAAGAAGAGGGCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGCAAAATCAATGAACGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGGATGGCGGTCATGTTGGATGAGATAATTAATTATGTTCAATCTCTGCAGAATCAAGTAGAGTTCCTGTCTATGAAACTGGCTGCAGCTAGCTCTTTGTATGACTTCAACTCGGAGGTCGATGCCATATCAAAACTACAGAGAGCGAAGGCACATGAAGCAAAAGAAGAACTGGAGAGATTGATGAGAGACGGATATGGAGGAATAGGTTGCTTCCACTCAAATTTGCCCCTTTGA 792 47.47 MADFPPHFQTFISPHSMDDPSLHLLPPPYSVPPNPPPNFTNFFPFSGDPFFPHQPPPQFPPPNPPEPTSSFPLFPSQTAPPPPLSEFHDIKKRKSMDVSESSSGISTPQLSETGFNTKQNSRKGKRLKRTEIEEEEKSRREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSLYDFNSEVDAISKLQRAKAHEAKEELERLMRDGYGGIGCFHSNLPL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1081086 1082595 + CmoCh10G002430.1 Cmo10g00243 389589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00243 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 4 262 IPR024097 GO:0006355
Cmo10g00243 263 Coils Coil 198 218 - -
Cmo10g00243 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 219 IPR036638 GO:0046983
Cmo10g00243 263 CDD bHLH_AtBPE_like 141 224 - -
Cmo10g00243 263 MobiDBLite consensus disorder prediction 26 135 - -
Cmo10g00243 263 Gene3D - 147 220 IPR036638 GO:0046983
Cmo10g00243 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
Cmo10g00243 263 MobiDBLite consensus disorder prediction 99 120 - -
Cmo10g00243 263 MobiDBLite consensus disorder prediction 26 42 - -
Cmo10g00243 263 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Cmo10g00243 263 SMART finulus 157 207 IPR011598 GO:0046983
Cmo10g00243 263 PANTHER TRANSCRIPTION FACTOR BEE 1 4 262 - -
Cmo10g00243 263 Coils Coil 229 249 - -
Cmo10g00243 263 MobiDBLite consensus disorder prediction 49 82 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00243 Cmo13g01064 CCT
Cmo10g00243 Cmo18g00036 CCT
Cmo10g00243 Cmo13g01064 ECH
Cmo10g00243 Cmo18g00036 ECH
Cmo10g00243 Cmo11g00282 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00243 Cmo-Chr10:1081086 Cmo18g00036 Cmo-Chr18:213740 4.56E-64 dispersed
Cmo10g00243 Cmo-Chr10:1081086 Cmo11g00282 Cmo-Chr11:1371030 6.34E-87 wgd
Cmo10g00243 Cmo-Chr10:1081086 Cmo13g01064 Cmo-Chr13:8842441 1.52E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10436 PF00010 HLH 4.50E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00243 - - csv:101209353 305.449