Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00245 ATGGCTGTGCTCAGCAAAACCAAAAGTACGCTCGAGGGGCTTGTTAGGGACAGTTCATTTAAATGGTTGTTAGGGAAGCGAAGCTTTTTTGATGAAGAAATCGAAGAGATTGAAAAGTTTCCTTCTGCTCAGAGAAATTGGCTAAGCGAGCTCTCTCCATTTGCCAATGTGGTTGTTCGGAGATGTACTAAAATTCTTGGTGTTTCTGCTAGCGAACTTCAACAAAGCTTTAATACGGAGGCAATTGATTCACTAAAGCTTACCTCAAATTATGCAAGAAACTTGCTGGAGTATTGCTGTTTCAGGGCACTTGCACTATGTACGCAAAATACGGGCTATTTGGGTGATAAAAAATTTCGACGCTTAACCTTTGACATGATGATAGCTTGGGAAGCCCCAGCAAGCTCTAGCCAGCCTTTACTTGATATTGATGAAGAGGCATCAGTTGGGGTGGAGGCTTTCTCACGAATCGCTCCAGCAGTCCCCATAATTTCAAACGTGATTGTTAGTGAAAATCTTTTCGAGGCGCTGACTTCATCAACCAGTGCTAGACTTCAGTTCTCTGTTTACGACAAGTACCTGAGCGGGCTAGAAAATCTAATATTACATGTTCATCTTGATAGAGTGATAAAAAAAATGAAAAACCTATCACAGTCAAACCTTCTTCAGTCTGAAAGATCATTAAGAGAAGAAAAGATTTTAGAAGTGGATGGAACAGTCACCACACAACCAGTTCTTGAACATGTTGGAATTTCTACCTGGCCGGGTAGGTTGGTTCTGACAGATCATGCACTTTACTTCGAAGCTCTTCGTGTCGTATCATTTGACAAGGCAAAAAGATACGACTTATCTGATGATCTGAAGCAGGTTGTCAAACCTGAATTGACTGGACCATGGGGCACCCGGCTTTTCGATAAGGCGGTTCTATATAAATCCATTTCCTTATCCGAACCAGTAGTGATCGAGTTTCCTGAACTTAAAGGCCATACTCGTCGAGATTTTTGGTTGGCAATCATCCGTGAGGTTCTGTATGTTCATAGATTTATCAACAAGTTCCAGATCAAGGGAATTCAAAGGAGTGAAGCGCTTTCAAAAGCTGTTCTTGGAATTCTACGTTTACAAGCCATTCAAGATATATGTTCTACACCATCGCTTGGATGCGAGTCGCTTCTCATGTTTAATCTTTGTGATCAGCTCCCAGGTGGGGACTTAATATTGGAAACCCTTGCGAATATGTCGGAAATGAAGGAGAATGAACGGACGAACAATTCTAGTCACGAAAAGGGAATGTATTCAATCTCAGCACTCGACGTTGCTTCTCACTTGGGATTTGGAATGGGAACAGCTTTAAGCGATCCGAACGAAAATGAGCTTGTTGTGGGTGAGATTGCTGTTGGAAAAATGACTCCTTTGGAAAGAGCAGTCAAGGAATCAAGAAACAACTATGAAAAGGTGGTGATGGCTCGAGAGACGGTCGATGGAGCGAAAGTAGATGGCATTGATACGAATCTGGCAGTGATGAAGGTATTAGAATTAATGCTGCCAGTGAGTGAACTTGGGATGTACCTTGTTTCTTTGGCACTATGGGAAGATCCTATGAAGTCTTTGGCATTCTGTTTGATCTCCAGTTACATTATCTGCAGGGACTGGCTGCCCTATGCCATCGCGCTGTTACTTGCGTTCATGGCAGTTTTCATGATGGTTACACGACTTTTCAACCAAGGAGGTACCCCCGTCGACGAAGTTAAGGTCGTTGCCCCTCCAGCAATGAATGCAATGGAGCAGCTTTTAGCCGTTCAGAACACGATTTCTCAAGTGGAACAGTTGATCCAAGACGGGAATATCGTTCTCCTCAAGCTACGCGCTCTGCTGCTCGCCATTTTCCCTCAGGCGACGTTGAAGTTTGCAGTATCTCTGCTAGTGATAGCCTTAACTCTAGCCTTCCTTCCCACAAAATACATACTTCTAATGGTGTTCTTGGAGGCATTTACAAGATTCCCATGCCCGAATCCGATCGTTCTCCCCACGTTTTTATGCCCTTCTGCGTTGATTCCATACTGGACCAATCGGAAGAGTGCAAAAATGAAGCCGTTTAGATCCAACGTTGTGGAAACCCTTCAGCTTTTGCGCCATGCTGTTATGGAGAAGCCCTTTCTTCTGTACTTGGCTCCTCTGTTTTTGCTTGCTTGGGCTTTCGAGAAATGGGTTTTTTCTTTCTCTAATTGGATCCCTCTAGTTATTGCCGTGTGGGCGACCTTACAGGTAGTTCTATTCTTGGTTTCTCTTCATAATTATGGGAATTTTCAACGGCAACTAGTTGTAGAGGAGTTGAACAAAAAATGGAAGAAAATTGTATTGGACACCTCGAGAATCATGCGTTTGGGTTTTGATTGGGACACAAATGAAATGAGTATCATGTTGCAAGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTTATCAACAGCATTCACATAAAGGGTGATCTTCTCTTTAGGCCAATCTTGGATGGGAGAGCCATTTTGTATTCATTTGTTTGCACTCCAGAAGTGAGAATAGGAGTAGCTTTCGGAAGCGGCGGTAGCCAGTCGTTACCTGCAACAGAGCTTCCTGGTGTCTCTTCTTGGCTGGTTAAACTTCTAACAGATATCATAGTAAAGACAATGGTTGAACCTCGACGCCGCTGTCTCTCATTGCCAGCAGTTGACCTGGGTAAAAAGGCTGTCAGTGGTACATTATATGTGACAGTCATCTCAGCCAGTAAGCTTTCCAGGAATTACTCAAGAGGCAACTCTTCCAGAAATCCTCTGAGTACTTATATGAATAGTCCCCCAGAAGAAAACTTAACTGATAAGGAAGAACTGCAGACATTTGTCGAGGTGGAATTTCATGAGCTAAGATCTGACTCTGAAGTGATAGCAAAGCATGCTGAGTTTTGTGGAAAAGAGGTTGAAATGGTTGTCCCGTTTGAAGGCGTTGGTTGTGGGGAGTTAACAGTGAAGCTTGTTACTAAAGAATGGCAATTTTCTGATGGTTCACATAGCTCGCTTAATCTTCATGTTAGACCTGAACAGCCGGTTGATGGGTCCTCAAGCTTTCCTTCAAGAACTGGAAGGAAAATTGCCATTACCATTGTAGAAGGAAAAGATCTTAGTTTGAAGGATAAATCTGCTAAGAGTGAGTCATATGTAAAACTGGAATATGGGAAGACTTCGTTTCAGGCTCTCCAGAAAACAAAAACTGCTGTTTCTGTAAATCCTAATTGGAATCAAAAGTTCGAGTTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTGGCGTAGATATATTTGGGGATGAAAACATAGGTACTGCCCGAGTGAATTTGGAAGGACTTCTTGAAGGAACAGTCAGGGACGTATGGGGTTCAAACACAGGCTCAACTAATGGTTGGATCGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGAACAAGCGACCCTTATGTGAGAGTGCATTATGGAGACATGAAGAAACGAACAAAGGTTATGTTCAAAACTTTAAATCCTCACTGGAACCAGACGTTAGAGTTCCCTGATAATGGGAGCCCTTTAGTGCTGTATGTTAAGGATCATAATGCTTTACTACCCACATCAAGCATTGGAGACTGTGTTGTTGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTGACAAGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCTGATCCTCAGAAACAGAAAAGGCTTAGTTTAGATTCTGAATCATCTGCTGTTACCAAGGCACATCAAATTTCAAGTCAGATGAAGCAAACAATCAGCAAGTTTCGCAGTTTGTTCGAGGAGGCTAATCTCGACGGTGTTTCGGCGACGTTGAGTGAACTAGAAAGCCTGGAGGAAGTGCAGCAGGAGTATATACTACAGCTTGAAACTGAACAAACGCTTCTCATAAATAAGATTAAGGAGCTTGGTCAGGAGATTCTTAATACTCCTTCAATTAGTCGGAGATCTTCTGGAAATTGA 4089 42.72 MAVLSKTKSTLEGLVRDSSFKWLLGKRSFFDEEIEEIEKFPSAQRNWLSELSPFANVVVRRCTKILGVSASELQQSFNTEAIDSLKLTSNYARNLLEYCCFRALALCTQNTGYLGDKKFRRLTFDMMIAWEAPASSSQPLLDIDEEASVGVEAFSRIAPAVPIISNVIVSENLFEALTSSTSARLQFSVYDKYLSGLENLILHVHLDRVIKKMKNLSQSNLLQSERSLREEKILEVDGTVTTQPVLEHVGISTWPGRLVLTDHALYFEALRVVSFDKAKRYDLSDDLKQVVKPELTGPWGTRLFDKAVLYKSISLSEPVVIEFPELKGHTRRDFWLAIIREVLYVHRFINKFQIKGIQRSEALSKAVLGILRLQAIQDICSTPSLGCESLLMFNLCDQLPGGDLILETLANMSEMKENERTNNSSHEKGMYSISALDVASHLGFGMGTALSDPNENELVVGEIAVGKMTPLERAVKESRNNYEKVVMARETVDGAKVDGIDTNLAVMKVLELMLPVSELGMYLVSLALWEDPMKSLAFCLISSYIICRDWLPYAIALLLAFMAVFMMVTRLFNQGGTPVDEVKVVAPPAMNAMEQLLAVQNTISQVEQLIQDGNIVLLKLRALLLAIFPQATLKFAVSLLVIALTLAFLPTKYILLMVFLEAFTRFPCPNPIVLPTFLCPSALIPYWTNRKSAKMKPFRSNVVETLQLLRHAVMEKPFLLYLAPLFLLAWAFEKWVFSFSNWIPLVIAVWATLQVVLFLVSLHNYGNFQRQLVVEELNKKWKKIVLDTSRIMRLGFDWDTNEMSIMLQAKLAMPFTGTARIVINSIHIKGDLLFRPILDGRAILYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDIIVKTMVEPRRRCLSLPAVDLGKKAVSGTLYVTVISASKLSRNYSRGNSSRNPLSTYMNSPPEENLTDKEELQTFVEVEFHELRSDSEVIAKHAEFCGKEVEMVVPFEGVGCGELTVKLVTKEWQFSDGSHSSLNLHVRPEQPVDGSSSFPSRTGRKIAITIVEGKDLSLKDKSAKSESYVKLEYGKTSFQALQKTKTAVSVNPNWNQKFEFDEIGGGEYLKIKCFGVDIFGDENIGTARVNLEGLLEGTVRDVWGSNTGSTNGWIELVIIEAKDLVAADIGGTSDPYVRVHYGDMKKRTKVMFKTLNPHWNQTLEFPDNGSPLVLYVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVTRGEIHIQITRKVPDPQKQKRLSLDSESSAVTKAHQISSQMKQTISKFRSLFEEANLDGVSATLSELESLEEVQQEYILQLETEQTLLINKIKELGQEILNTPSISRRSSGN 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1086364 1096746 + CmoCh10G002450.1 Cmo10g00245 389591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00245 1362 ProSiteProfiles C2 domain profile. 1132 1245 IPR000008 -
Cmo10g00245 1362 Pfam C2 domain 1042 1140 IPR000008 -
Cmo10g00245 1362 Pfam C2 domain 1151 1247 IPR000008 -
Cmo10g00245 1362 Gene3D C2 domain 1141 1262 IPR035892 -
Cmo10g00245 1362 Gene3D C2 domain 1041 1138 IPR035892 -
Cmo10g00245 1362 CDD C2 1151 1247 - -
Cmo10g00245 1362 CDD C2 1045 1140 - -
Cmo10g00245 1362 SMART C2_3c 1150 1244 IPR000008 -
Cmo10g00245 1362 SMART C2_3c 1042 1140 IPR000008 -
Cmo10g00245 1362 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1145 1260 IPR035892 -
Cmo10g00245 1362 Pfam Plant protein of unknown function (DUF639) 468 665 IPR006927 -
Cmo10g00245 1362 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639) 1 665 - -
Cmo10g00245 1362 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED 1 665 - -
Cmo10g00245 1362 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1041 1144 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00245 - - - cmos:111429749 1245.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00245 Cmo13g01065 CCT
Cmo10g00245 Cmo18g00035 CCT
Cmo10g00245 Cmo13g01065 ECH
Cmo10g00245 Cmo18g00035 ECH
Cmo10g00245 Cmo11g00278 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01198 Cmo-Chr7:6502147 Cmo10g00245 Cmo-Chr10:1086364 3.88E-94 dispersed
Cmo10g00245 Cmo-Chr10:1086364 Cmo18g00035 Cmo-Chr18:203546 2.58E-21 dispersed
Cmo11g00281 Cmo-Chr11:1364309 Cmo10g00245 Cmo-Chr10:1086364 0 transposed
Cmo19g00325 Cmo-Chr19:2556726 Cmo10g00245 Cmo-Chr10:1086364 5.57E-23 transposed
Cmo10g00245 Cmo-Chr10:1086364 Cmo11g00278 Cmo-Chr11:1355854 1.57E-26 wgd
Cmo10g00245 Cmo-Chr10:1086364 Cmo13g01065 Cmo-Chr13:8849908 8.19E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019480 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00245 Cmo_Chr10 FPKM 0.363393 0.590247 0.616446 0.841187 1.555546 1.999034 1.896213 0.0 0.0 0.246726