Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00246 ATGGCCTTTGCAACTACCAGACTATCGGAGCTGCCATTGAAGAACTCGCTTCCACTCTTCTCCCACTCGCGTACTCTTCTTTCAACCCCCAATTTGTCTTTGCAGATTCTAAAGACATTCTCTTCTCTCAGAACCCCTAAAACCACTGAGCACAGCGGCAAGAGAATCCCTAAAACTTCCCACAATTCTGGACCCTCTTCTTCTTGGATCTCCAAATGGCCTCCTGGGAGCTCTCGTAATGATCGTAAAGTCGAGAAGAATTTGGCCGAAACAACCCGAGATGATCGAACTGATCGAGCGGAGAATCAGACGCAATTCTTCGATAAGAACGGAGGGGAGAGTGCAGTTGATCGAATTGTGCTTCGCTTACGAAATTTAGGGTTAGAGGAGGATAACGAATTGGATTCTCTCGAGCCAATGCCCGTGATGGGGGAGGAAAGATTTGGGGATTTACTTCAACGTGAATGGATTCGACCGGATACCATATTGGATGAAATGGTTCTACCATGGGAGAGAGAGGAGGAAAGGGCTGAAGAGGAGGGCGGTGGAAGAGGGTTGAAAAGGAGAAAGATGAAACCTCCGACATTAGCTGAATTGACAATCGAAGATGAGGAGCTGAGGCGACTGAGGGGAATGGGGATGTTCATCAGAGAACGGATTAACATACCGAAAGCGGGGATTACACAGCCAGTGCTAGAGAAGATTCATGGGAAATGGAGGAAGGAGGAACTTGTAAGGCTTAAGTTTCACGAGGAGCTTGCACACGACATGAAGACAGCGCACCAAATTGTAGAGCGAAGAACTGGAGGATTGGTTCTGTGGAGGTCTGGAAGTGTTATGGTAGTTTACCGCGGTAGTAACTATGAAGCGCCATCAAAAACTAAGCCCCTTGCAAGGGAGGGGGAAGGGATATCCATCCCAGATGCTTCTTCTGCTGCCATTTCAACAATGAGTGGCAGTGTTGCGGCTTCAGCTCCAGAGACGGCCAAGATGTCAGAGGAAGAGGTTGAATACAACCAACTCCTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTATTGATGCTGATCAGCTTCCTCCGAGTATTCCCGGTTACAAAACTCCTCTCAGGCTTCTCCCAACTGGAATGCGGTCGGGACTTACCAATGCAGAGATGACTGAGATGAGGAAGCTTACGAAATCCTTGCCTTGTCATTTTGCTCTTGGGAGAAACAGGAACCATCAGGGCCTGGCTGTTGCTATACTTAAGCTTTGGGAAAAGAGCCTAGTGGCTAAAATTGCTGTTAAAAGAGGTATACAGAATACCAATAATAAACTCATGGCTGAGGAGATAAGGAATTTAACAGGAGGCATGTTACTATTGAGGAACAAGTATTTTATCGTCGTATATCGTGGGAAGGATTTTCTCCCAACAAGTGTAGCTGCAGCGTTGGCGGAACGGCAGGAATTAACAAAACAGATTCAAGACTTGGAAGAGAAAGCTCGAAGTAAAGTCGTTGAGGCTACTTCATCAAGCGATGATGGACAGGCACCTGCAGGTACCTTGGCTGAATTTTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATATCTGCTGAAGAGCGTCAAAAAATGATTGAAGAAAGCTCGAGAGCGAAAACTGCAAAACTTGTGAGACGAATTGAACATAAGCTAGGTGTTGCCCAAGCTAAGAAACTTAGAGCAGAAAGATTGCTATCTAGAATTGAAGCGTCCATGGTTCTTTCTGGCCCTGATGATGATCAGGAAACAATAACAGATGAGGAACGGGTCATGTTTCGAAAAGTTGGGTTACGAATGACAGCATATCTACCCATAGGCATTCGTGGTGTCTTTGATGGTGTGGTTGAAAACATGCATTTACACTGGAAGCATAGGGAGCTCGTTAAGTTAATTAGCAAGCAAAAGACACTTGCTTTTGTGGAAGAAACAGCAAGATTGTTAGAGTATGAGAGTGGTGGGATACTAGTTTCGATCGATCGAGTTCCAAAAGGATATACCCTTATTTACTATCGAGGAAAGAATTATCGTCGACCCATTGCCTTGAGGCCAAGAAACTTGCTTACGAAGGCAAAAGCATTGAAGCGTTCGGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCATATATCTGAACTCGAGAAAAACATAGAGGAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATGAGAATAACTGGCCGTCTCAGGATGGACTTGTCTCAGAATCTTTCCAAGACGAGGAAGCATCTTTGTCTGCGATTTCAGACGATGACAGTGATGAAGATAGCAATGATGAAGACAGTGAGTTCGAAGAGGATAAAGATTTTGATTTTTCCGACTCGGAAAGCACCGATGATCCTCTGAACTAG 2415 45.59 MAFATTRLSELPLKNSLPLFSHSRTLLSTPNLSLQILKTFSSLRTPKTTEHSGKRIPKTSHNSGPSSSWISKWPPGSSRNDRKVEKNLAETTRDDRTDRAENQTQFFDKNGGESAVDRIVLRLRNLGLEEDNELDSLEPMPVMGEERFGDLLQREWIRPDTILDEMVLPWEREEERAEEEGGGRGLKRRKMKPPTLAELTIEDEELRRLRGMGMFIRERINIPKAGITQPVLEKIHGKWRKEELVRLKFHEELAHDMKTAHQIVERRTGGLVLWRSGSVMVVYRGSNYEAPSKTKPLAREGEGISIPDASSAAISTMSGSVAASAPETAKMSEEEVEYNQLLDGLGPRFVEWWGTGVLPIDADQLPPSIPGYKTPLRLLPTGMRSGLTNAEMTEMRKLTKSLPCHFALGRNRNHQGLAVAILKLWEKSLVAKIAVKRGIQNTNNKLMAEEIRNLTGGMLLLRNKYFIVVYRGKDFLPTSVAAALAERQELTKQIQDLEEKARSKVVEATSSSDDGQAPAGTLAEFYEAQSRWGREISAEERQKMIEESSRAKTAKLVRRIEHKLGVAQAKKLRAERLLSRIEASMVLSGPDDDQETITDEERVMFRKVGLRMTAYLPIGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYTLIYYRGKNYRRPIALRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEEMKKEIGVTEDSDDENNWPSQDGLVSESFQDEEASLSAISDDDSDEDSNDEDSEFEEDKDFDFSDSESTDDPLN 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1097090 1101656 + CmoCh10G002460.1 Cmo10g00246 389592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00246 804 MobiDBLite consensus disorder prediction 58 75 - -
Cmo10g00246 804 ProSiteProfiles CRM domain profile. 385 482 IPR001890 GO:0003723
Cmo10g00246 804 MobiDBLite consensus disorder prediction 78 100 - -
Cmo10g00246 804 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 799 - -
Cmo10g00246 804 Coils Coil 715 742 - -
Cmo10g00246 804 Coils Coil 480 507 - -
Cmo10g00246 804 ProSiteProfiles CRM domain profile. 595 695 IPR001890 GO:0003723
Cmo10g00246 804 SMART CRS1_YhbY_2 597 684 IPR001890 GO:0003723
Cmo10g00246 804 SMART CRS1_YhbY_2 387 471 IPR001890 GO:0003723
Cmo10g00246 804 SMART CRS1_YhbY_2 201 284 IPR001890 GO:0003723
Cmo10g00246 804 MobiDBLite consensus disorder prediction 45 100 - -
Cmo10g00246 804 Gene3D - 199 296 IPR035920 -
Cmo10g00246 804 Gene3D - 596 699 IPR035920 -
Cmo10g00246 804 Gene3D - 386 477 IPR035920 -
Cmo10g00246 804 ProSiteProfiles CRM domain profile. 199 295 IPR001890 GO:0003723
Cmo10g00246 804 MobiDBLite consensus disorder prediction 766 804 - -
Cmo10g00246 804 SUPERFAMILY YhbY-like 596 694 IPR035920 -
Cmo10g00246 804 MobiDBLite consensus disorder prediction 748 765 - -
Cmo10g00246 804 Pfam CRS1 / YhbY (CRM) domain 598 684 IPR001890 GO:0003723
Cmo10g00246 804 Pfam CRS1 / YhbY (CRM) domain 202 284 IPR001890 GO:0003723
Cmo10g00246 804 Pfam CRS1 / YhbY (CRM) domain 387 471 IPR001890 GO:0003723
Cmo10g00246 804 SUPERFAMILY YhbY-like 200 292 IPR035920 -
Cmo10g00246 804 MobiDBLite consensus disorder prediction 738 804 - -
Cmo10g00246 804 SUPERFAMILY YhbY-like 387 478 IPR035920 -
Cmo10g00246 804 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 3 799 IPR045278 GO:0000375|GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00246 - - - csv:101219948 1237.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00246 Cmo11g00277 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00246 Cmo-Chr10:1097090 Cmo14g01815 Cmo-Chr14:13855366 6.74E-179 dispersed
Cmo04g01829 Cmo-Chr4:9194676 Cmo10g00246 Cmo-Chr10:1097090 5.53E-06 transposed
Cmo09g00945 Cmo-Chr9:4965702 Cmo10g00246 Cmo-Chr10:1097090 1.80E-09 transposed
Cmo10g00246 Cmo-Chr10:1097090 Cmo11g00277 Cmo-Chr11:1351036 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00246 Cmo_Chr10 FPKM 48.4459 52.034657 39.870583 41.427872 76.459717 89.030975 79.407806 44.729126 48.171207 47.499245