Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00250 | ATGCGTATGAGCTGCAACGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAAACCCCTCAATCCCAAGCCAACGCTACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTCTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCTGCTATTTTTAAATCTTTGCTGTTCGAGGCGTGTGGCCGGATTGTCAATCCGATCTTCGGGTCGGCCGGATTGTTGTGGTCCGGGAGTTGGCAGCTGTGTCAGGACGCCGTGGAAGCCGTTCTAAATGGCGCACCGATTCCGCCGGTTTCTTACGAGATGGCGACGTCCCACATGGGCCCACCTTTGAAAGGCTGCGACATCCGCCACGTGTCCAAACAGCAAGGCTCCGGTCTCAGTGAGATAAAGAAGCGGCGGAGGTTCAAGCGCAAGCCGAAGCCGAAGGAGGAACCGGTTATGTTACCCCAGTTCGTAGTGGATGGATCGACCCGGATTTCATCGGAGCCCCGGTGTTTCACGTTTGAGTTGGACAATCTAGAGGGCCATGTGTCGCCGGAGAAGGTCTGCGGCAGCAACGATACCGAGTGCTTGTCGGTGGAAACCACGGAGGCTTCTTCGGTGGGCCAGGGTGGTGGGGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACGGTCGGATGCTGACGTGTAAAGAGAGGTAG | 726 | 56.75 | MRMSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLNGAPIPPVSYEMATSHMGPPLKGCDIRHVSKQQGSGLSEIKKRRRFKRKPKPKEEPVMLPQFVVDGSTRISSEPRCFTFELDNLEGHVSPEKVCGSNDTECLSVETTEASSVGQGGGVELELTLGFGHGRMLTCKER | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1112817 | 1113747 | + | CmoCh10G002500.1 | Cmo10g00250 | 389596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00250 | 241 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 231 | - | - | |
Cmo10g00250 | 241 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 40 | 1 | 231 | - | - | |
Cmo10g00250 | 241 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Cmo10g00250 | 241 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00250 | Cmo11g00273 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00405 | Cmo-Chr1:1979705 | Cmo10g00250 | Cmo-Chr10:1112817 | 7.11E-80 | dispersed | |
Cmo10g00250 | Cmo-Chr10:1112817 | Cmo14g00825 | Cmo-Chr14:4272280 | 7.73E-84 | dispersed | |
Cmo10g00250 | Cmo-Chr10:1112817 | Cmo11g00273 | Cmo-Chr11:1337398 | 1.21E-77 | wgd | |
Cmo10g00250 | Cmo-Chr10:1112817 | Cmo18g01029 | Cmo-Chr18:11077585 | 6.24E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10438 | PF03195 | LOB | 7.40E-22 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00250 | - | - | cmo:103494123 | 373.629 |