Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00250 ATGCGTATGAGCTGCAACGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAAACCCCTCAATCCCAAGCCAACGCTACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTCTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCTGCTATTTTTAAATCTTTGCTGTTCGAGGCGTGTGGCCGGATTGTCAATCCGATCTTCGGGTCGGCCGGATTGTTGTGGTCCGGGAGTTGGCAGCTGTGTCAGGACGCCGTGGAAGCCGTTCTAAATGGCGCACCGATTCCGCCGGTTTCTTACGAGATGGCGACGTCCCACATGGGCCCACCTTTGAAAGGCTGCGACATCCGCCACGTGTCCAAACAGCAAGGCTCCGGTCTCAGTGAGATAAAGAAGCGGCGGAGGTTCAAGCGCAAGCCGAAGCCGAAGGAGGAACCGGTTATGTTACCCCAGTTCGTAGTGGATGGATCGACCCGGATTTCATCGGAGCCCCGGTGTTTCACGTTTGAGTTGGACAATCTAGAGGGCCATGTGTCGCCGGAGAAGGTCTGCGGCAGCAACGATACCGAGTGCTTGTCGGTGGAAACCACGGAGGCTTCTTCGGTGGGCCAGGGTGGTGGGGTGGAGTTGGAACTTACCTTGGGGTTTGGGCACGGTCGGATGCTGACGTGTAAAGAGAGGTAG 726 56.75 MRMSCNGCRVLRKGCSESCSIRPCLQWIKTPQSQANATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLNGAPIPPVSYEMATSHMGPPLKGCDIRHVSKQQGSGLSEIKKRRRFKRKPKPKEEPVMLPQFVVDGSTRISSEPRCFTFELDNLEGHVSPEKVCGSNDTECLSVETTEASSVGQGGGVELELTLGFGHGRMLTCKER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1112817 1113747 + CmoCh10G002500.1 Cmo10g00250 389596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00250 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 231 - -
Cmo10g00250 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 231 - -
Cmo10g00250 241 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cmo10g00250 241 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00250 Cmo11g00273 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00405 Cmo-Chr1:1979705 Cmo10g00250 Cmo-Chr10:1112817 7.11E-80 dispersed
Cmo10g00250 Cmo-Chr10:1112817 Cmo14g00825 Cmo-Chr14:4272280 7.73E-84 dispersed
Cmo10g00250 Cmo-Chr10:1112817 Cmo11g00273 Cmo-Chr11:1337398 1.21E-77 wgd
Cmo10g00250 Cmo-Chr10:1112817 Cmo18g01029 Cmo-Chr18:11077585 6.24E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10438 PF03195 LOB 7.40E-22 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00250 - - cmo:103494123 373.629