Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00252 ATGATCGAAGAAAGCCTGGACGAAGAGTCTCTCATGGACGTTCGCGCCAAAACAGGGAAGAATAGGCGCGAACGCTCGGCGAACACGGCACACTGCGGTCACAACGATGGCCGGAAGAAGAGGCGGAGATTTGCATTCAGTTCAGAAACCACAATTCCAACATCCAGCGAGCCTCAGAAGCTTCCTTCATCGAAAAGGTCCAAGCCAGTTCGTTCTCCCTCTCGAACTTCACGAAAGTACGAGAAGAGGAGGTCGAGTGAGTCGGATGGTCATCGTCGATGGGTGTACTCTACTCGTGATTGCTCAAGATTTATAGGCCTTGAAATCCAGAAACCTTCTCACCATCAAGATGATAAGATTATGGTTGCTTCATATAATATATTAGGAGTGGAAAATGCATTGAAGCATCCAGATTTGTATCATAGAGTGCCTTCCAAATTCATGGATTGGAGTTTCCGGAAAGAGCTTATATGCAATGCAATTAAATTTTACAATGCAGGCATCTTATGCTTGCAGGAGGTTGACCGTTTTAATGATTTGGATGAACTTTTCCAAAATTATGGCTACAAAAGTGTTTACAAGGCTAGAACTGGTGAAGCAAATGACGGGTGTGCTTTATTTTGGATTGAAAAACTGTTTACCCTTTTGCATCAAGAAAGTATAGAGTTCCAGAGTTTTGGGCTACGTAACAATGTTGCTCAACTATGTGTTTTTAAGATGAATAAACCTAAATCAAAGTCCAAAACAAGTCGAAGCTTTGTGATTGGGAACATACACGTTCTTTTCAACCCAAATCGAGGAGACATTAAGCTCGGGCAGGTCAGACTGTTTCTTGAAAAAGCTCATAGCCTCTCACAAAGATGGGGAAACATACCTGTTATTATGGCCGGGGATCTGAATAGCATACCAAAGAGTGCAATATATCAGTTTTTGGCTTCATCAGAGGTCAGTTCACTTTTACTTCTGGATATACAACTGCATGACCGCAGAAAGATTTCAGGGCAGCTTGATTTTTCATCATCACGCGGAGCCTTCAGATTTTGTAGTGAGGGTACAAAATGGTCCAATGTTTCAGCCTCAAGGTCCTTCAGATGGAGTGGTGAGGAAATAAGGATCGCATCTGGTATCGAGAACGTTACCTGTCTTCAGCACCATTTAAAGCTTTCCAGTGCATACTATGGGGTTCCTGGAAGTTGTAAAACAAGAGATGCTAATGGAGAACCTTTAGTAACTTCATTCCACTCCAACTTTATGGGAACTGTCGATTATATATGGTATCAGATTTTACTGCACTCAGAAAAACTTGCCCCTGTTAGGGTTCTGGAAACATTGCCTATTGATGCATTAAAAAGGACTGGAGGACTTCCTAATGAGGACCACGGCCGAGATGTAAGACAATTAAGTAGAATAGTTCTGGCTATTGGCTATTGGCTATTGGCTATTTTCGCTTCAAAATTTCCTTGTACTAAATGGGGCAGTGATCATCTTGCTCTTGTGTGCGAACTGGCTTTTGATGACGAACACAATGTGACTTGA 1536 42.32 MIEESLDEESLMDVRAKTGKNRRERSANTAHCGHNDGRKKRRRFAFSSETTIPTSSEPQKLPSSKRSKPVRSPSRTSRKYEKRRSSESDGHRRWVYSTRDCSRFIGLEIQKPSHHQDDKIMVASYNILGVENALKHPDLYHRVPSKFMDWSFRKELICNAIKFYNAGILCLQEVDRFNDLDELFQNYGYKSVYKARTGEANDGCALFWIEKLFTLLHQESIEFQSFGLRNNVAQLCVFKMNKPKSKSKTSRSFVIGNIHVLFNPNRGDIKLGQVRLFLEKAHSLSQRWGNIPVIMAGDLNSIPKSAIYQFLASSEVSSLLLLDIQLHDRRKISGQLDFSSSRGAFRFCSEGTKWSNVSASRSFRWSGEEIRIASGIENVTCLQHHLKLSSAYYGVPGSCKTRDANGEPLVTSFHSNFMGTVDYIWYQILLHSEKLAPVRVLETLPIDALKRTGGLPNEDHGRDVRQLSRIVLAIGYWLLAIFASKFPCTKWGSDHLALVCELAFDDEHNVT 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1117355 1124257 + CmoCh10G002520.1 Cmo10g00252 389598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00252 511 MobiDBLite consensus disorder prediction 8 34 - -
Cmo10g00252 511 MobiDBLite consensus disorder prediction 47 70 - -
Cmo10g00252 511 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 66 504 - -
Cmo10g00252 511 Pfam Endonuclease/Exonuclease/phosphatase family 123 495 IPR005135 GO:0003824
Cmo10g00252 511 Gene3D Endonuclease/exonuclease/phosphatase 85 510 IPR036691 -
Cmo10g00252 511 MobiDBLite consensus disorder prediction 1 86 - -
Cmo10g00252 511 PANTHER PROTEIN ANGEL 66 504 - -
Cmo10g00252 511 SUPERFAMILY DNase I-like 111 505 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00252 - - - bhj:120088620 749.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01546 Cmo-Chr1:11912756 Cmo10g00252 Cmo-Chr10:1117355 1.39E-16 dispersed
Cmo09g00744 Cmo-Chr9:3735909 Cmo10g00252 Cmo-Chr10:1117355 3.66E-16 dispersed
Cmo10g00252 Cmo-Chr10:1117355 Cmo10g00262 Cmo-Chr10:1167456 4.69E-67 dispersed
Cmo10g00252 Cmo-Chr10:1117355 Cmo10g00261 Cmo-Chr10:1165774 2.54E-10 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g332 . . . Bda15g00518 . . . . . . Cma10g00237 . Car10g00224 . . . . . . . . . . . Cla06g01472 Cam06g1625 Cec06g1688 Cco06g1681 Clacu06g1590 Cmu06g1541 Cre06g2353 . . . Cone19ag0278 . . . . . . . . . . . Bma08g00064 . Cmo10g00252 . . . . . . . . . . . . . . . . . . . . . Lsi06g01335 . Chy02g02367 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00252 Cmo_Chr10 FPKM 9.831924 10.620228 11.1105 12.236007 9.62616 8.902527 9.239098 11.197455 11.957904 10.08849