Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00264 ATGTGGGAAAACATTGCTTCAATGGTTCCAACCAAGAACATGGAAGACTTGAAGCAGCACTACCAAATGCTGGTGGAAGACGTCGGTGCTATTGAGTCCGGCCAAATTCCTATTCCCAACTATGATTCTGTTTCAGAAGAAGCAACTAAAGCCTCTACCAAGGCGAAGGATCATCGTCTTCATCCACATGGAGCTACTGGTTCTGATAGTAATAAAATACCCAATTCTGGTCTTGGAAGTGGGTTTTCTGGGCTCTCCCACAATTCATCTGCCCATGCCGCAAAGGGTGGATCCAGGTCTGAACAAGAAAGAAAGAAAGTGATTCCATGGACAGAGGAAGAACACAGGTTATTTCTGCTGGGGCTAGACAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGAAACTTCGTTATATCCAGGACACCGACACAAGTGGCCAGTCATGCACAGAAATACTTCATACGATTGAACTCAATGAACAGAGATAGAAGAAGATCAAGTATTCGTGACATAACCTCAGTTAATAATGGCGGTGGTGACGTCATGTCCCATCAATCTCCGATCACCGGCCACCAGACAAATGGCCCTAACCAGAGTAATCCGCCGGCTTTGGGGCCACCAGGGAAGCACGGGCCTCAGCAGCATCTGCCCGGAATCGGCATGTACGGGGCACCTGTTGGACATCCAGTGGCGGCTCGTCCAGGGCACATGGCGTCGGCGGTTGACACTCCAGTGATGCTTCCTCATGGAATCCATCCCCACCCTCCTTATGTCATGCCACTTGCTTATCCAATGGCACCTCCACAATTGCATCAATGA 822 49.03 MWENIASMVPTKNMEDLKQHYQMLVEDVGAIESGQIPIPNYDSVSEEATKASTKAKDHRLHPHGATGSDSNKIPNSGLGSGFSGLSHNSSAHAAKGGSRSEQERKKVIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIRDITSVNNGGGDVMSHQSPITGHQTNGPNQSNPPALGPPGKHGPQQHLPGIGMYGAPVGHPVAARPGHMASAVDTPVMLPHGIHPHPPYVMPLAYPMAPPQLHQ 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1173721 1175149 - CmoCh10G002640.1 Cmo10g00264 389610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00264 273 MobiDBLite consensus disorder prediction 164 224 - -
Cmo10g00264 273 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Cmo10g00264 273 MobiDBLite consensus disorder prediction 68 96 - -
Cmo10g00264 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 158 IPR017930 -
Cmo10g00264 273 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
Cmo10g00264 273 SMART sant 106 156 IPR001005 -
Cmo10g00264 273 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Cmo10g00264 273 SUPERFAMILY Homeodomain-like 104 159 IPR009057 -
Cmo10g00264 273 Gene3D - 1 38 - -
Cmo10g00264 273 CDD SANT 2 25 IPR001005 -
Cmo10g00264 273 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 156 IPR006447 GO:0003677
Cmo10g00264 273 MobiDBLite consensus disorder prediction 171 200 - -
Cmo10g00264 273 MobiDBLite consensus disorder prediction 39 107 - -
Cmo10g00264 273 Gene3D - 108 160 - -
Cmo10g00264 273 MobiDBLite consensus disorder prediction 49 65 - -
Cmo10g00264 273 CDD SANT 109 154 IPR001005 -
Cmo10g00264 273 PANTHER TRANSCRIPTION FACTOR MYBS1 4 271 - -
Cmo10g00264 273 PANTHER TRANSCRIPTION FACTOR KUA1 4 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00264 - - - cmax:111484899 510.375
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00264 Cmo11g00267 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00264 Cmo-Chr10:1173721 Cmo03g00378 Cmo-Chr3:4698603 1.02E-48 dispersed
Cmo10g00264 Cmo-Chr10:1173721 Cmo11g00267 Cmo-Chr11:1311612 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10440 PF00249 Myb_DNA-binding 1.20E-10 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00264 Cmo_Chr10 FPKM 26.20278 28.090065 52.165359 52.169312 87.997681 68.101784 99.15815 73.924652 76.832016 87.763023