Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00269 | ATGGATGAAAATGTCGATGAGCAAAGCAAGCTTCCCGAGCTCAAACTTGATGCTAAACAGGCTCAAGGGTTTCTCGCATTCTTCAAAACCCTACCCCCCGACTCGAGAGCTGTTCGATTTTTTGATCGTCGGGATTACTATACTGTCCATGGCGATAGTGCAGTTTTCATTGCAAAGACCTATTACCGTACTACAACTGCTTTACGACAACTGGGCAATGTATCTGAAGCTCTGTCTAGTGTGAGTGTCAGCAAAAATATGTTTGAATCAATTGCCCGGGATCTTCTTTTGGAAAGAATGGACCATACATTGGAGCTTTATGAGGGCAGTGGTTCCAATTGGAGACTGATCAAAAGTGGTTCACCTGGTAATATTGGCAGTTTTGAAGACGTTTTGTTTGCAAATAATGAAATGCAGGACAGCCCTGCTATTGTGGCACTATTACCGAACTTCCGAGAAAATGGGTGCATTGTTGGACTAGCCTACGTTGATTTAACAAAAAGATTGATGGGGTTGGCTGAATTTCTCGACGATAGCCATTTTACAAATGTGGAGTCAGCTCTGGTTGGTCTCGGTTGTAAGGAATGCCTTCTGCCTCTAGACAGTGGAAAGTTCGGTGATTTAAAACCTCTACATGATGCATTGACAAAGTGTGGTGTGATGTTAACTGAGAGAAAAAAATCAGAATTTAAAATGAGAGATTTGGTGCAGGATCTTTCAAGGCTTGTCAAAGGTTCTGTTGAACCTGTTAGAGATATGGTATCTGGATTTGAATTTGCGCCTGCTGCCTTAGGAGCATTGCTGGCTTATGCAGAATTACTGGCAGATGAAAGCAATTATGGAAACTACAACATCCAGAAATACAATCTTGATAGCTACATGAGGTTAGACTCTGCTGCCATGAGAGCATTAAATGTCCTAGAAAGTAAAACTGATGCAAACAAAAACTTCAGCCTGTTTGGTCTCATGAATAGAACCTGTACTGCTGGAATGGGTAAAAGATTGCTTCATATGTGGCTAAAACAGCCTCTGTTAGACGTCAAAGAAATTAATTCTAGACTGGATCTTGTTCAAGCATTTGTGGAGGATACTGCTCTCCGCCAGGATTTGAGACAACATCTCAAAAGAATCTCAGATATTGAACGATTGACACAGTATCTCGAGAAGAGAAGAGCTGGATTACAGCACATTGTTAAACTTTATCAGTCAAGTATAAGGCTTCCATTCATTAAAAATGCCTTGGAGAATTATGAAGGACAATTTTCCTCACTTATCAAGGAGAAGTACATGGAATGTCTTGAGATCTGGACTGACAACGATCATCTGAACAAGTTCAATAATCTTGTGGAAACTGCTGTTGATCTTGATCAGCTTGAGAATGGAGAATATATGATTTCATCTAGTTACGACCCTGCTCTGTCCAAGTTGAAGAATGTGCAGGAATCGATAGAGCAGCAAATACAGGATTTGCATAGGCAGGTTGCTAATGATCTTGATCTTGCGGTTGATAAGGCTTTGAAGTTAGACAAAGGTACACAATTTGGACATGTTTTTAGAATTACTAAGAAAGAAGAACCAAAAGTAAGGAAAAAGCTCTCCACCCACTTCATTGTCCTTGAAACCCGAAAAGATGGAGTGAAGTTTACAAACACCAAACTTAAAAAGCTGGGTGACCAGTATCAGAAAATAGTCGAGGAGTACAAGAATTTCCAGAAAGAGTTGGTTCACCGAGTAATTGAAACTGCATCATCCTTCAATGAGGTATTCAGACCCTTGGCGGAAATGCTCTCAGAATTAGACGTTTTACTTGGTTTTGCTGATTTAGCCTCTAGCTGTCCAACTCCTTATACTAGGCCAGACATCACATCATCGGATGAGGGAAATATTATATTGGAAGGAAGTAGGCACCCCTGTGTGGAGGCTCAAGATTGGGTTAATTTCATACCAAATGATTGTAAATTAGTAAGGGGAGAAAGTTGGTTCCAAATCATTACTGGGCCTAATATGGGCGGAAAATCTACATTTATCCGACAGGTTGGAGTGAACATTCTAATGGCACAAGTAGGTTGTTTTGTTCCCTGTGACAAAGCTAGTATTTCTGTTCGTGATTGCATTTTTGCCCGCGTAGGTGCAGGTGACTGTCAACTTCGTGGAGTTTCTACCTTTATGCAAGAGATGCTTGAAACTGCATCTATACTGAAAGGAGCTACAGAGAAGTCTTTGATAATCATTGATGAATTGGGCCGTGGGACATCCACTTATGATGGATTTGGTTTAGCATGGGCCATTTGTGAACATCTTGTTGAAGTGATTAAAGCACCCACTTTATTTGCAACCCACTTCCACGAACTAACTGCACTAGCTCATGGCAATACTGATCTTGAGCCCCATGGAAAGCAAATTGTTGGTGTGGCAAACTTTCATGTCAGTGCACACATAGACTCATCAAATCACAAGTTGACAATGCTGTACAAGGTTGAACCTGGAGCTTGTGATCAAAGCTTTGGGATTCATGTAGCAGAATTTGCAAACTTTCCTTCTAGTGTCGTGGCACTTGCCAGAGAAAAGGCTGCTGAACTGGAAGATTTCTCCACTGATTCAACTACTTCAGCCACTACCGGGAAAGAGATACCATCAAAGCGAAAACGCGAGTTTGGTTCAGAAGACATGTCCAAAGGTGTAGGGCGGGCTCGCCAGTTTTTAGAGGAGTTTGCTAATCTTCCATTGGATAAAATGGATCTAAAGGAAGCTCTACAACAAGTGAGCCAATTACGAGATGAAAAGAGGAGAGAGGGGGGGTTTCTTTCGTTTTCCTTTCCCTTTCCCGACGGTGGAAACAGACCCATCTATCTCCTTTTACTTCAATTCATTCTTTTCCTCACTTTACACCAACTGATTGCGCATCCGGGGTTAGAAGCAGAGACGGGGATTGAGAGCTTCTGGTCCTTTCTTCTCCTTCATCATTTTTTCTATTATACCCAGTTTCTGATTTCTCTTCTTTTTTCCAATTTGGGTTCTGTTCTTTTCGATGGTTTGCACGATGGGTCATCTGGTTTTTGGGTTTTGAGGGGCGTGTCGAAGAGGGGTGGAGGCCTGTTTGAGGCACTTTTGGCCCACGGTTTACTCTTCTGTTTCACGCTGTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCTTACAGTTGGTGGGTTATATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAGTTACTTCTTTGTATATACCTCGAGAGCCGATCTGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATCTTAATAGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGTGACGAGGCAATATGGGAGACGCTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTGGCTGCTACAATATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCCGAGTGCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTCAGATATCTAGACTGGAACAGTGGTCTAATAGCTTATTCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTACGAGTGCAAAAGACCTGCCAATTCCTGTCCTTTTCTCGCCCCTTCTATTATTGCAAGGCGCTGCCGTTATTTATGCTATATCTAGGCTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTAGCACAGCATTGTATTTCAGTTTTTCTACTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAACACTTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGCCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCATACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTTTCTATCGAAGAACGGTTACCGGTATACGATGTATAG | 4473 | 42.32 | MDENVDEQSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTVHGDSAVFIAKTYYRTTTALRQLGNVSEALSSVSVSKNMFESIARDLLLERMDHTLELYEGSGSNWRLIKSGSPGNIGSFEDVLFANNEMQDSPAIVALLPNFRENGCIVGLAYVDLTKRLMGLAEFLDDSHFTNVESALVGLGCKECLLPLDSGKFGDLKPLHDALTKCGVMLTERKKSEFKMRDLVQDLSRLVKGSVEPVRDMVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAFVEDTALRQDLRQHLKRISDIERLTQYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQFSSLIKEKYMECLEIWTDNDHLNKFNNLVETAVDLDQLENGEYMISSSYDPALSKLKNVQESIEQQIQDLHRQVANDLDLAVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKNFQKELVHRVIETASSFNEVFRPLAEMLSELDVLLGFADLASSCPTPYTRPDITSSDEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHGNTDLEPHGKQIVGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPSSVVALAREKAAELEDFSTDSTTSATTGKEIPSKRKREFGSEDMSKGVGRARQFLEEFANLPLDKMDLKEALQQVSQLRDEKRREGGFLSFSFPFPDGGNRPIYLLLLQFILFLTLHQLIAHPGLEAETGIESFWSFLLLHHFFYYTQFLISLLFSNLGSVLFDGLHDGSSGFWVLRGVSKRGGGLFEALLAHGLLFCFTLLLVLKLDHFVSYSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESRSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATIFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDWNSGLIAYSEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPTSAKDLPIPVLFSPLLLLQGAAVIYAISRLLEKAVLLLRGGSSTALYFSFSTRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSSCSEKCKKCPICRVSIEERLPVYDV | 1490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1183016 | 1202615 | - | CmoCh10G002690.1 | Cmo10g00269 | 389615 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00269 | 1490 | Pfam | MutS domain V | 662 | 861 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | Gene3D | MutS, connector domain | 122 | 291 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | SMART | ring_2 | 1443 | 1477 | IPR001841 | - | |
Cmo10g00269 | 1490 | Pfam | MutS domain III | 300 | 606 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | SMART | mutATP5 | 659 | 858 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | SUPERFAMILY | RING/U-box | 1434 | 1485 | - | - | |
Cmo10g00269 | 1490 | Coils | Coil | 553 | 573 | - | - | |
Cmo10g00269 | 1490 | Gene3D | - | 617 | 933 | IPR027417 | - | |
Cmo10g00269 | 1490 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 616 | 862 | IPR027417 | - | |
Cmo10g00269 | 1490 | Coils | Coil | 473 | 493 | - | - | |
Cmo10g00269 | 1490 | SUPERFAMILY | DNA repair protein MutS, domain III | 297 | 611 | IPR036187 | - | |
Cmo10g00269 | 1490 | Pfam | MutS domain II | 144 | 283 | IPR007860 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | ProSiteProfiles | Zinc finger RING-type profile. | 1443 | 1478 | IPR001841 | - | |
Cmo10g00269 | 1490 | Pfam | Transmembrane Fragile-X-F protein | 1051 | 1315 | IPR019396 | - | |
Cmo10g00269 | 1490 | MobiDBLite | consensus disorder prediction | 863 | 888 | - | - | |
Cmo10g00269 | 1490 | CDD | ABC_MSH2_euk | 630 | 861 | - | - | |
Cmo10g00269 | 1490 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1034 | 1490 | - | - | |
Cmo10g00269 | 1490 | Pfam | MutS family domain IV | 469 | 565 | IPR007861 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | Coils | Coil | 911 | 931 | - | - | |
Cmo10g00269 | 1490 | Gene3D | DNA repair protein MutS, domain I | 7 | 121 | IPR016151 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | PANTHER | TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN | 1034 | 1490 | - | - | |
Cmo10g00269 | 1490 | Pfam | MutS domain I | 23 | 128 | IPR007695 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1419 | 1488 | IPR013083 | - | |
Cmo10g00269 | 1490 | SUPERFAMILY | DNA repair protein MutS, domain II | 146 | 309 | IPR036678 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | SMART | DNAend | 314 | 642 | IPR007696 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | ProSitePatterns | DNA mismatch repair proteins mutS family signature. | 740 | 756 | IPR000432 | GO:0005524|GO:0006298|GO:0030983 | |
Cmo10g00269 | 1490 | Pfam | Zinc finger, C3HC4 type (RING finger) | 1440 | 1483 | - | - | |
Cmo10g00269 | 1490 | CDD | mRING-HC-C3HC5_CGRF1 | 1442 | 1478 | - | - | |
Cmo10g00269 | 1490 | Gene3D | - | 523 | 616 | - | - | |
Cmo10g00269 | 1490 | Gene3D | - | 294 | 522 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02108 | Cmo-Chr4:13506098 | Cmo10g00269 | Cmo-Chr10:1183016 | 4.08E-82 | dispersed | |
Cmo10g00269 | Cmo-Chr10:1183016 | Cmo16g00135 | Cmo-Chr16:625008 | 3.43E-53 | dispersed | |
Cmo14g01705 | Cmo-Chr14:13384774 | Cmo10g00269 | Cmo-Chr10:1183016 | 1.95E-07 | dispersed | |
Cmo16g01198 | Cmo-Chr16:8558796 | Cmo10g00269 | Cmo-Chr10:1183016 | 6.04E-10 | dispersed | |
Cmo02g01574 | Cmo-Chr2:9085119 | Cmo10g00269 | Cmo-Chr10:1183016 | 1.10E-46 | transposed | |
Cmo04g02107 | Cmo-Chr4:13502777 | Cmo10g00269 | Cmo-Chr10:1183016 | 2.66E-107 | transposed | |
Cmo08g00493 | Cmo-Chr8:3046985 | Cmo10g00269 | Cmo-Chr10:1183016 | 2.28E-06 | transposed | |
Cmo16g00004 | Cmo-Chr16:39812 | Cmo10g00269 | Cmo-Chr10:1183016 | 3.39E-17 | transposed | |
Cmo16g00957 | Cmo-Chr16:6331694 | Cmo10g00269 | Cmo-Chr10:1183016 | 4.80E-48 | transposed | |
Cmo10g00269 | Cmo-Chr10:1183016 | Cmo11g00263 | Cmo-Chr11:1296730 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00269 | K08735 | - | csv:101215589 | 1692.55 |