Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00269 ATGGATGAAAATGTCGATGAGCAAAGCAAGCTTCCCGAGCTCAAACTTGATGCTAAACAGGCTCAAGGGTTTCTCGCATTCTTCAAAACCCTACCCCCCGACTCGAGAGCTGTTCGATTTTTTGATCGTCGGGATTACTATACTGTCCATGGCGATAGTGCAGTTTTCATTGCAAAGACCTATTACCGTACTACAACTGCTTTACGACAACTGGGCAATGTATCTGAAGCTCTGTCTAGTGTGAGTGTCAGCAAAAATATGTTTGAATCAATTGCCCGGGATCTTCTTTTGGAAAGAATGGACCATACATTGGAGCTTTATGAGGGCAGTGGTTCCAATTGGAGACTGATCAAAAGTGGTTCACCTGGTAATATTGGCAGTTTTGAAGACGTTTTGTTTGCAAATAATGAAATGCAGGACAGCCCTGCTATTGTGGCACTATTACCGAACTTCCGAGAAAATGGGTGCATTGTTGGACTAGCCTACGTTGATTTAACAAAAAGATTGATGGGGTTGGCTGAATTTCTCGACGATAGCCATTTTACAAATGTGGAGTCAGCTCTGGTTGGTCTCGGTTGTAAGGAATGCCTTCTGCCTCTAGACAGTGGAAAGTTCGGTGATTTAAAACCTCTACATGATGCATTGACAAAGTGTGGTGTGATGTTAACTGAGAGAAAAAAATCAGAATTTAAAATGAGAGATTTGGTGCAGGATCTTTCAAGGCTTGTCAAAGGTTCTGTTGAACCTGTTAGAGATATGGTATCTGGATTTGAATTTGCGCCTGCTGCCTTAGGAGCATTGCTGGCTTATGCAGAATTACTGGCAGATGAAAGCAATTATGGAAACTACAACATCCAGAAATACAATCTTGATAGCTACATGAGGTTAGACTCTGCTGCCATGAGAGCATTAAATGTCCTAGAAAGTAAAACTGATGCAAACAAAAACTTCAGCCTGTTTGGTCTCATGAATAGAACCTGTACTGCTGGAATGGGTAAAAGATTGCTTCATATGTGGCTAAAACAGCCTCTGTTAGACGTCAAAGAAATTAATTCTAGACTGGATCTTGTTCAAGCATTTGTGGAGGATACTGCTCTCCGCCAGGATTTGAGACAACATCTCAAAAGAATCTCAGATATTGAACGATTGACACAGTATCTCGAGAAGAGAAGAGCTGGATTACAGCACATTGTTAAACTTTATCAGTCAAGTATAAGGCTTCCATTCATTAAAAATGCCTTGGAGAATTATGAAGGACAATTTTCCTCACTTATCAAGGAGAAGTACATGGAATGTCTTGAGATCTGGACTGACAACGATCATCTGAACAAGTTCAATAATCTTGTGGAAACTGCTGTTGATCTTGATCAGCTTGAGAATGGAGAATATATGATTTCATCTAGTTACGACCCTGCTCTGTCCAAGTTGAAGAATGTGCAGGAATCGATAGAGCAGCAAATACAGGATTTGCATAGGCAGGTTGCTAATGATCTTGATCTTGCGGTTGATAAGGCTTTGAAGTTAGACAAAGGTACACAATTTGGACATGTTTTTAGAATTACTAAGAAAGAAGAACCAAAAGTAAGGAAAAAGCTCTCCACCCACTTCATTGTCCTTGAAACCCGAAAAGATGGAGTGAAGTTTACAAACACCAAACTTAAAAAGCTGGGTGACCAGTATCAGAAAATAGTCGAGGAGTACAAGAATTTCCAGAAAGAGTTGGTTCACCGAGTAATTGAAACTGCATCATCCTTCAATGAGGTATTCAGACCCTTGGCGGAAATGCTCTCAGAATTAGACGTTTTACTTGGTTTTGCTGATTTAGCCTCTAGCTGTCCAACTCCTTATACTAGGCCAGACATCACATCATCGGATGAGGGAAATATTATATTGGAAGGAAGTAGGCACCCCTGTGTGGAGGCTCAAGATTGGGTTAATTTCATACCAAATGATTGTAAATTAGTAAGGGGAGAAAGTTGGTTCCAAATCATTACTGGGCCTAATATGGGCGGAAAATCTACATTTATCCGACAGGTTGGAGTGAACATTCTAATGGCACAAGTAGGTTGTTTTGTTCCCTGTGACAAAGCTAGTATTTCTGTTCGTGATTGCATTTTTGCCCGCGTAGGTGCAGGTGACTGTCAACTTCGTGGAGTTTCTACCTTTATGCAAGAGATGCTTGAAACTGCATCTATACTGAAAGGAGCTACAGAGAAGTCTTTGATAATCATTGATGAATTGGGCCGTGGGACATCCACTTATGATGGATTTGGTTTAGCATGGGCCATTTGTGAACATCTTGTTGAAGTGATTAAAGCACCCACTTTATTTGCAACCCACTTCCACGAACTAACTGCACTAGCTCATGGCAATACTGATCTTGAGCCCCATGGAAAGCAAATTGTTGGTGTGGCAAACTTTCATGTCAGTGCACACATAGACTCATCAAATCACAAGTTGACAATGCTGTACAAGGTTGAACCTGGAGCTTGTGATCAAAGCTTTGGGATTCATGTAGCAGAATTTGCAAACTTTCCTTCTAGTGTCGTGGCACTTGCCAGAGAAAAGGCTGCTGAACTGGAAGATTTCTCCACTGATTCAACTACTTCAGCCACTACCGGGAAAGAGATACCATCAAAGCGAAAACGCGAGTTTGGTTCAGAAGACATGTCCAAAGGTGTAGGGCGGGCTCGCCAGTTTTTAGAGGAGTTTGCTAATCTTCCATTGGATAAAATGGATCTAAAGGAAGCTCTACAACAAGTGAGCCAATTACGAGATGAAAAGAGGAGAGAGGGGGGGTTTCTTTCGTTTTCCTTTCCCTTTCCCGACGGTGGAAACAGACCCATCTATCTCCTTTTACTTCAATTCATTCTTTTCCTCACTTTACACCAACTGATTGCGCATCCGGGGTTAGAAGCAGAGACGGGGATTGAGAGCTTCTGGTCCTTTCTTCTCCTTCATCATTTTTTCTATTATACCCAGTTTCTGATTTCTCTTCTTTTTTCCAATTTGGGTTCTGTTCTTTTCGATGGTTTGCACGATGGGTCATCTGGTTTTTGGGTTTTGAGGGGCGTGTCGAAGAGGGGTGGAGGCCTGTTTGAGGCACTTTTGGCCCACGGTTTACTCTTCTGTTTCACGCTGTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCTTACAGTTGGTGGGTTATATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACACCTTTGCTTATAGCATTTGAGTTACTTCTTTGTATATACCTCGAGAGCCGATCTGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATCTTAATAGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGACGATGAAAGCATGAGTGACGAGGCAATATGGGAGACGCTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTGGCTGCTACAATATTTACTCTATTGAAGCTATGTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGCATTGCCGAGTGCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAATATTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTCAGATATCTAGACTGGAACAGTGGTCTAATAGCTTATTCAGAGCAGGATCAGCATCAAGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTACTCTGCATGTATTTAGAGGGAACGCCTACGAGTGCAAAAGACCTGCCAATTCCTGTCCTTTTCTCGCCCCTTCTATTATTGCAAGGCGCTGCCGTTATTTATGCTATATCTAGGCTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTAGCACAGCATTGTATTTCAGTTTTTCTACTAGGGCTCATGCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGATGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAACACTTTTAGTGGATATCCTCCCGAGATTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGGGAGCAGACAGAAATCACCAAATACAGCCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCGTGTAGGCATCGCATACTATGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCAATATGTCGTGTTTCTATCGAAGAACGGTTACCGGTATACGATGTATAG 4473 42.32 MDENVDEQSKLPELKLDAKQAQGFLAFFKTLPPDSRAVRFFDRRDYYTVHGDSAVFIAKTYYRTTTALRQLGNVSEALSSVSVSKNMFESIARDLLLERMDHTLELYEGSGSNWRLIKSGSPGNIGSFEDVLFANNEMQDSPAIVALLPNFRENGCIVGLAYVDLTKRLMGLAEFLDDSHFTNVESALVGLGCKECLLPLDSGKFGDLKPLHDALTKCGVMLTERKKSEFKMRDLVQDLSRLVKGSVEPVRDMVSGFEFAPAALGALLAYAELLADESNYGNYNIQKYNLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKEINSRLDLVQAFVEDTALRQDLRQHLKRISDIERLTQYLEKRRAGLQHIVKLYQSSIRLPFIKNALENYEGQFSSLIKEKYMECLEIWTDNDHLNKFNNLVETAVDLDQLENGEYMISSSYDPALSKLKNVQESIEQQIQDLHRQVANDLDLAVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTHFIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKNFQKELVHRVIETASSFNEVFRPLAEMLSELDVLLGFADLASSCPTPYTRPDITSSDEGNIILEGSRHPCVEAQDWVNFIPNDCKLVRGESWFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATHFHELTALAHGNTDLEPHGKQIVGVANFHVSAHIDSSNHKLTMLYKVEPGACDQSFGIHVAEFANFPSSVVALAREKAAELEDFSTDSTTSATTGKEIPSKRKREFGSEDMSKGVGRARQFLEEFANLPLDKMDLKEALQQVSQLRDEKRREGGFLSFSFPFPDGGNRPIYLLLLQFILFLTLHQLIAHPGLEAETGIESFWSFLLLHHFFYYTQFLISLLFSNLGSVLFDGLHDGSSGFWVLRGVSKRGGGLFEALLAHGLLFCFTLLLVLKLDHFVSYSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESRSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATIFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRESCSSSAVVRYLDWNSGLIAYSEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPTSAKDLPIPVLFSPLLLLQGAAVIYAISRLLEKAVLLLRGGSSTALYFSFSTRAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRILCSSCSEKCKKCPICRVSIEERLPVYDV 1490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1183016 1202615 - CmoCh10G002690.1 Cmo10g00269 389615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00269 1490 Pfam MutS domain V 662 861 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 Gene3D MutS, connector domain 122 291 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 SMART ring_2 1443 1477 IPR001841 -
Cmo10g00269 1490 Pfam MutS domain III 300 606 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 SMART mutATP5 659 858 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 SUPERFAMILY RING/U-box 1434 1485 - -
Cmo10g00269 1490 Coils Coil 553 573 - -
Cmo10g00269 1490 Gene3D - 617 933 IPR027417 -
Cmo10g00269 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 862 IPR027417 -
Cmo10g00269 1490 Coils Coil 473 493 - -
Cmo10g00269 1490 SUPERFAMILY DNA repair protein MutS, domain III 297 611 IPR036187 -
Cmo10g00269 1490 Pfam MutS domain II 144 283 IPR007860 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 ProSiteProfiles Zinc finger RING-type profile. 1443 1478 IPR001841 -
Cmo10g00269 1490 Pfam Transmembrane Fragile-X-F protein 1051 1315 IPR019396 -
Cmo10g00269 1490 MobiDBLite consensus disorder prediction 863 888 - -
Cmo10g00269 1490 CDD ABC_MSH2_euk 630 861 - -
Cmo10g00269 1490 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1034 1490 - -
Cmo10g00269 1490 Pfam MutS family domain IV 469 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 Coils Coil 911 931 - -
Cmo10g00269 1490 Gene3D DNA repair protein MutS, domain I 7 121 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1034 1490 - -
Cmo10g00269 1490 Pfam MutS domain I 23 128 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1419 1488 IPR013083 -
Cmo10g00269 1490 SUPERFAMILY DNA repair protein MutS, domain II 146 309 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 SMART DNAend 314 642 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 ProSitePatterns DNA mismatch repair proteins mutS family signature. 740 756 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cmo10g00269 1490 Pfam Zinc finger, C3HC4 type (RING finger) 1440 1483 - -
Cmo10g00269 1490 CDD mRING-HC-C3HC5_CGRF1 1442 1478 - -
Cmo10g00269 1490 Gene3D - 523 616 - -
Cmo10g00269 1490 Gene3D - 294 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02108 Cmo-Chr4:13506098 Cmo10g00269 Cmo-Chr10:1183016 4.08E-82 dispersed
Cmo10g00269 Cmo-Chr10:1183016 Cmo16g00135 Cmo-Chr16:625008 3.43E-53 dispersed
Cmo14g01705 Cmo-Chr14:13384774 Cmo10g00269 Cmo-Chr10:1183016 1.95E-07 dispersed
Cmo16g01198 Cmo-Chr16:8558796 Cmo10g00269 Cmo-Chr10:1183016 6.04E-10 dispersed
Cmo02g01574 Cmo-Chr2:9085119 Cmo10g00269 Cmo-Chr10:1183016 1.10E-46 transposed
Cmo04g02107 Cmo-Chr4:13502777 Cmo10g00269 Cmo-Chr10:1183016 2.66E-107 transposed
Cmo08g00493 Cmo-Chr8:3046985 Cmo10g00269 Cmo-Chr10:1183016 2.28E-06 transposed
Cmo16g00004 Cmo-Chr16:39812 Cmo10g00269 Cmo-Chr10:1183016 3.39E-17 transposed
Cmo16g00957 Cmo-Chr16:6331694 Cmo10g00269 Cmo-Chr10:1183016 4.80E-48 transposed
Cmo10g00269 Cmo-Chr10:1183016 Cmo11g00263 Cmo-Chr11:1296730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00269 K08735 - csv:101215589 1692.55