Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00278 ATGTTGCAGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGATGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 495 45.25 MLQSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1237091 1240049 - CmoCh10G002780.1 Cmo10g00278 389624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00278 164 Gene3D Histone, subunit A 12 153 IPR009072 GO:0046982
Cmo10g00278 164 MobiDBLite consensus disorder prediction 142 164 - -
Cmo10g00278 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 87 IPR003958 -
Cmo10g00278 164 SUPERFAMILY Histone-fold 20 150 IPR009072 GO:0046982
Cmo10g00278 164 MobiDBLite consensus disorder prediction 148 164 - -
Cmo10g00278 164 PANTHER PROTEIN DR1 HOMOLOG 9 163 IPR044255 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01358 Cmo-Chr2:8082176 Cmo10g00278 Cmo-Chr10:1237091 1.13E-08 dispersed
Cmo10g00278 Cmo-Chr10:1237091 Cmo04g01312 Cmo-Chr4:6677894 5.33E-19 dispersed
Cmo10g00278 Cmo-Chr10:1237091 Cmo11g00257 Cmo-Chr11:1261699 3.68E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10442 PF00808 CBFD_NFYB_HMF 3.00E-22 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00278 K21751 - csv:101214627 301.212