Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00278 | ATGTTGCAGTCTCGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCATCGCTTCCAAAAGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGATGCCCAAGACCTTCTGATCGAGTGTTGTGTAGAGTTTATAAACCTCGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATACGAACAACACAGGCACGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCGGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA | 495 | 45.25 | MLQSRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRHETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1237091 | 1240049 | - | CmoCh10G002780.1 | Cmo10g00278 | 389624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00278 | 164 | Gene3D | Histone, subunit A | 12 | 153 | IPR009072 | GO:0046982 | |
Cmo10g00278 | 164 | MobiDBLite | consensus disorder prediction | 142 | 164 | - | - | |
Cmo10g00278 | 164 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 22 | 87 | IPR003958 | - | |
Cmo10g00278 | 164 | SUPERFAMILY | Histone-fold | 20 | 150 | IPR009072 | GO:0046982 | |
Cmo10g00278 | 164 | MobiDBLite | consensus disorder prediction | 148 | 164 | - | - | |
Cmo10g00278 | 164 | PANTHER | PROTEIN DR1 HOMOLOG | 9 | 163 | IPR044255 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01358 | Cmo-Chr2:8082176 | Cmo10g00278 | Cmo-Chr10:1237091 | 1.13E-08 | dispersed | |
Cmo10g00278 | Cmo-Chr10:1237091 | Cmo04g01312 | Cmo-Chr4:6677894 | 5.33E-19 | dispersed | |
Cmo10g00278 | Cmo-Chr10:1237091 | Cmo11g00257 | Cmo-Chr11:1261699 | 3.68E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10442 | PF00808 | CBFD_NFYB_HMF | 3.00E-22 | CL0012 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00278 | K21751 | - | csv:101214627 | 301.212 |