Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00292 ATGGCTGTGGTGGCGCCGCCATTCTCCTGCCGTTACCGCGCTCCAACAACCATACGTAAACTAACTTCCAGCTCAATTTTAAAATGTTCCTTGCTTTTAATTTCATCTCCAAAATCATCCTTCTCTGTTTCTGCTCAAACCCATCAAGCTCAATCCATCAAGCTGGTTTCTGAACTCTCACTTCTTGAAGAGATTTGCGAGCTCTGTGAAGCGAGTGATCTCAATGGAGCTTTTGATTTTCTTCAGAGAGGATGGAAGAACAATGGTGGTTATGATTTGGTGCAGAGAAAAGAAGCCATGGGTGTGTTGTTGCAGAAATGTGGGCAGTTTAAAGACGTTGAAATTGGCCGCGAACTTGATGAAATGTTGCGCGTCTCCTCTCAGTTCAGCGGCGACTTTGTTCTCAATACCCGTCTCATCACTATGTACTCCATGTGTGGGTATCCTTCCGATGCTCGATTGGTTTTTGATCGTTTGCAGAACAGGAATTTGTTTCAGTGGAATGCACTTGTTAGTGGGTATGTTAGAAATGAACTCTACGACGAGGCGATTCACACTTTCATTGAGTTGATATCGGTAACTGGGTTTCAACCTGATAACTTTACACTGCCTTGCTTGATTAAGGCCTGTACAGGGAAGTGTGATGTTCGTTTGGGGCAATCGGTTCATGGGATGGCGGTGAAAATGGGATTCATCATGGATTTGTTTGTGGGTAATGCGATGATTTCGCTGTATGGAAAATGTGGCCTTGTAGACGAAGCCATCAAGGTGTTTGACAAAATGCCTGAACGAAACTTGATATCATGGAATTCGTTGATTTGTGGGTTTTCTGAGAATGAATTATGGCTGGAAGCTTTTGGTGCGTTTAGGAGGCTTTTGGAGAGTAGCGATGGCTTGATTCCGGATGTTGCTACAATAGTAACTTTGTTGCCTGTGTGTTCAGGAGAAGGAGATGTAGATATGGGAATGGTAATTCATGGGATGGCACTGAAACTGGGGCTTGTTCGTGAACTAATGGTATGCAATGCTTTGGTTGACATGTATTCAAAATGCGGTTATTTATCACAAGCAGCACTTTTATTTCATAAGATTGAGAACAAAAATGTAGTTTCTTGGAATTCCATGGTTGGTGCATATTCTAGGGAAGGATTCGTATATGAAACATTTGAACTGTTGAGAAAGATGTGGATGGAAGAAGAAATGATCAAAGTAAACGAGGTCACCATTTTGAATTTGTTACCTGCTTGTGTGGAAGAAACTGAACTGTTGAGTTTGAGGGAACTTCATGGATATTCACTCAGACATTGGTTTCAATACGATGAATCGATAAATAACGCGTTCATAGCCGCCTATGCCAAGTGTGGATCATTGAGTTCTGCTGAGCATATCTTCTCTGGTATGAATACTAAGTCAGTTAGCTCTTGGAATGCAATCATAGGTGGATATGCCCACAATGGTGATCCACGAAAGGCTTTTGATTTTTATTTTCGGATGAGACGTTCGGGCTACTTTCTTGACGATTTTAGCATCAGTACCCTACTATTGGCTTGTGCCCGTTTGAGACATCTACAATATGGTAAAGAGATACATGGATTTGTTCTAAGGAATGGATTAGAGATGGATTCATTTGTAGCTGTCTCATTACTATCACTTTATATCCATTGTTCTAAACCATTCTATGCCAGAACTTTCTTTGAGAGGATAAAAGTTAAAAACTCAGTGTGTTGGAATGCAATGCTTTCAGGCTATTCTCAAAACGAACTTCCAAACGAAGCAATCTCTCTCTTTCGTCAAATGCTTTCTGAAGGACTCAAACCGAACGAGATCGCCATGGCGAGTGTCCTTGGGGCTTGTTCTGAGCTATCAGCCCTGAGTCTAGGAAGAGAAGTTCATTGCTTTGTCTTGAAAAGCCGTCTTATAGAAGACAATTTCGTTGCTTGTTCGCTCATGGACATGTATGCCAAAAGCGGCTGTTTGGGACGATCTCAACGAATATTTAACGGGTTAAACAAGAAAGAAGCAGCTTCATGGAACGTGATGATCACAGGATTTGGTGTGCATGGACAAGGTAACAAGGCCGTGGAGCTGTTTGAGGAGATGCAAAGATTAAATAAGCAGCCTGATAGGTTCACTTTTCTTGGAGTTCTCCAGGCATGTTGTCATGCTGGATTGGTATCAGAGGGGCTATATTATCTTGCTCAAATGCAGAGTTTGTACAAACTAGAACCGGAACTCGAACACTATGCTTGTGTGATCGACATGCTCGGTAGAGCAGGTCGACTAAACGAAGCTTTAAACCTCATAAATGAGATGCCTGAAGAACCAGATGCTAAAATCTGGAGCTCATTGCTCAGTTCTAGTAGAACTTACGGTGATCTAGCAATGGGAGAAAAGGCTGCTGAGAAGTTGCTTGCACTGGAAGCAAACAAAGCTGACAGCTACATTTTGCTCTCTAACTTGTATGCAACAGCAGGAAAATGGGATCTTGTGCGAATGGTGCGACAGAAAATGAAGGATCTCAACCTTCAGAAAGCGGCTGGCTGCAGTTGGATTGAACTTGGAGGTAAAATCTATAGTTTTATAGCGGGTAACGACTTGTCGATCCTCGATTCAAACGAGATTCGAAAGATGTGGAATAGACTGGAGAAACAAATTGTGGAAATTGGCTACACACCTGATTCTAGTTGTGTTCTTCATGAATTGGAAGAGGAGGAAAAGATTAAGATATTGAAGGGGCATAGTGAGAAGCTAGCAATTTCCTTTGGCTTCTTAAACACGAAAGAAGGCACTACGTTAAGAATCTGCAAGAATCTAAGAATTTGTAGAGACTGTCACAATGCAGCCAAGTTCATAAGCAAAGCCGCCAAAAGGGAGATCATTATTAGAGACAATAAGCGTTTTCATCACTTCAAAAATGGGATTTGTTCATGTGGAGATTATTGGTAG 2946 41.82 MAVVAPPFSCRYRAPTTIRKLTSSSILKCSLLLISSPKSSFSVSAQTHQAQSIKLVSELSLLEEICELCEASDLNGAFDFLQRGWKNNGGYDLVQRKEAMGVLLQKCGQFKDVEIGRELDEMLRVSSQFSGDFVLNTRLITMYSMCGYPSDARLVFDRLQNRNLFQWNALVSGYVRNELYDEAIHTFIELISVTGFQPDNFTLPCLIKACTGKCDVRLGQSVHGMAVKMGFIMDLFVGNAMISLYGKCGLVDEAIKVFDKMPERNLISWNSLICGFSENELWLEAFGAFRRLLESSDGLIPDVATIVTLLPVCSGEGDVDMGMVIHGMALKLGLVRELMVCNALVDMYSKCGYLSQAALLFHKIENKNVVSWNSMVGAYSREGFVYETFELLRKMWMEEEMIKVNEVTILNLLPACVEETELLSLRELHGYSLRHWFQYDESINNAFIAAYAKCGSLSSAEHIFSGMNTKSVSSWNAIIGGYAHNGDPRKAFDFYFRMRRSGYFLDDFSISTLLLACARLRHLQYGKEIHGFVLRNGLEMDSFVAVSLLSLYIHCSKPFYARTFFERIKVKNSVCWNAMLSGYSQNELPNEAISLFRQMLSEGLKPNEIAMASVLGACSELSALSLGREVHCFVLKSRLIEDNFVACSLMDMYAKSGCLGRSQRIFNGLNKKEAASWNVMITGFGVHGQGNKAVELFEEMQRLNKQPDRFTFLGVLQACCHAGLVSEGLYYLAQMQSLYKLEPELEHYACVIDMLGRAGRLNEALNLINEMPEEPDAKIWSSLLSSSRTYGDLAMGEKAAEKLLALEANKADSYILLSNLYATAGKWDLVRMVRQKMKDLNLQKAAGCSWIELGGKIYSFIAGNDLSILDSNEIRKMWNRLEKQIVEIGYTPDSSCVLHELEEEEKIKILKGHSEKLAISFGFLNTKEGTTLRICKNLRICRDCHNAAKFISKAAKREIIIRDNKRFHHFKNGICSCGDYW 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1297936 1300881 + CmoCh10G002920.1 Cmo10g00292 389638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00292 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Cmo10g00292 981 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 128 318 - -
Cmo10g00292 981 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 419 969 - -
Cmo10g00292 981 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 419 969 - -
Cmo10g00292 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cmo10g00292 981 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 128 318 - -
Cmo10g00292 981 Gene3D Tetratricopeptide repeat domain 216 325 IPR011990 GO:0005515
Cmo10g00292 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 198 IPR002885 -
Cmo10g00292 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat family 571 618 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat family 470 519 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat family 675 721 IPR002885 -
Cmo10g00292 981 Gene3D Tetratricopeptide repeat domain 646 859 IPR011990 GO:0005515
Cmo10g00292 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Cmo10g00292 981 Gene3D Tetratricopeptide repeat domain 426 531 IPR011990 GO:0005515
Cmo10g00292 981 Gene3D Tetratricopeptide repeat domain 91 215 IPR011990 GO:0005515
Cmo10g00292 981 Gene3D Tetratricopeptide repeat domain 326 425 IPR011990 GO:0005515
Cmo10g00292 981 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 321 417 - -
Cmo10g00292 981 TIGRFAM PPR: pentatricopeptide repeat domain 574 608 IPR002885 -
Cmo10g00292 981 TIGRFAM PPR: pentatricopeptide repeat domain 748 773 IPR002885 -
Cmo10g00292 981 TIGRFAM PPR: pentatricopeptide repeat domain 239 265 IPR002885 -
Cmo10g00292 981 TIGRFAM PPR: pentatricopeptide repeat domain 676 708 IPR002885 -
Cmo10g00292 981 TIGRFAM PPR: pentatricopeptide repeat domain 474 506 IPR002885 -
Cmo10g00292 981 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 321 417 - -
Cmo10g00292 981 Pfam DYW family of nucleic acid deaminases 889 981 IPR032867 GO:0008270
Cmo10g00292 981 Pfam E motif 790 852 IPR046848 -
Cmo10g00292 981 Gene3D Tetratricopeptide repeat domain 533 633 IPR011990 GO:0005515
Cmo10g00292 981 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 398 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat 370 396 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat 748 773 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat 167 191 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat 341 369 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat 267 295 IPR002885 -
Cmo10g00292 981 Pfam PPR repeat 239 265 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00292 - - - cmo:103494078 1590.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00276 Cmo-Chr5:1189306 Cmo10g00292 Cmo-Chr10:1297936 8.63E-14 dispersed
Cmo10g00292 Cmo-Chr10:1297936 Cmo18g01256 Cmo-Chr18:12305510 0 dispersed
Cmo10g00292 Cmo-Chr10:1297936 Cmo18g00839 Cmo-Chr18:9765823 6.97E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011822 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00292 Cmo_Chr10 FPKM 7.138789 8.525328 10.262473 10.594066 9.780045 9.939546 10.415489 15.068242 13.108409 13.818485