Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00299 ATGCAAGACATCCACTCGATCGCCGGAGGAAGTCGGTTGTTCGGTGGCGGGGGTGACCGTCGTCTGCGGCCGCACCTCCACCACCACCAAAACCACCAGGCCTTGAAGTGTCCAAGGTGTGATTCTCTCAATACAAAGTTCTGTTATTACAATAACTATAATCTCTCTCAGCCTCGTCACTTCTGCAAGAGCTGCCGACGTTACTGGACTAAAGGCGGCGTCCTCCGTAACGTTCCTGTCGGAGGCGGTTGCCGGAAAACCAAACGCTCCTCCTCGTCGAAGTCCAAGTCCACTCCCGATGTAGCGGCGACGTCTCCTCCTTCTCCTCCTCCTCCTCGTCTTCGCGAACGTAAATCCACCTCTCATTCCAGCAGCGAGAGCTCCAGCCTAACCGCTACAACCACCACGGCTGCCGCCGCGGCGACAGAGGCCGTCTCTGCTCCGTCCTCCATTTCAACGTCGGCTCTATTGAGCGTACAGGATAGGAAATTGTTCCCCGCTCCGACTACAAACCCTAATTTCGAAGGTGCGGCGACGGACTGTGGGATTTTCTCGGAAATCGGAAACTTCACGAGCTTGATCACATCGACTAACGAGACATTGGCGTTCGGATTCGGCAATATGGGGGATGTGACGCCGTTTGCGATGAATCATCCGTTTCAAAATCAGGCGGCGAATCAATGGCCGTCACAGAGAATGATGAACGGTAACGATGAGGTGAAGATGCAGGAGATCACAGGCGGAGGAGGAGGAGGAGGGTACATGGATCAGACGGCACAGGTGGATCCATCAGCAGGGCTACAGAATAGCAGATCAAGCAACATTGGATTTGGACCGTTGGATTGGCAATCAAACGGAGATCATCAAGCTCTGTTTGATCTTCCCAACGCCGTTGATCAAGCATACTGGAGTCAAAATCAGTGGAGTAGTGATCAAGATCAGCCTAATCTGTACCTCCCTATTACTGTGCTGTCACTGTCACTGTCGCTGTCGCTGAGACTTGTGTGTTTGAGAACTCCCACTGTCATCTCTGTGGTTGTTGCTTGTGGGGATGGAGATTGGATTGGTAAGTACTCTGCTGCAATGGTCCTGGAATGGGAATTGGCTTGCTTGATCAAGCGAGATCTGACCTGTGAACTGTCATTTTCATTGTCTCTCCCTTCTTGCTTCTACACAACATTCAACATTCATGATTCCAACTGCGATCTGCCCTTCGATTTGGACTTGGCACATGGTGGTGGCTGA 1245 52.05 MQDIHSIAGGSRLFGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSTPDVAATSPPSPPPPRLRERKSTSHSSSESSSLTATTTTAAAAATEAVSAPSSISTSALLSVQDRKLFPAPTTNPNFEGAATDCGIFSEIGNFTSLITSTNETLAFGFGNMGDVTPFAMNHPFQNQAANQWPSQRMMNGNDEVKMQEITGGGGGGGYMDQTAQVDPSAGLQNSRSSNIGFGPLDWQSNGDHQALFDLPNAVDQAYWSQNQWSSDQDQPNLYLPITVLSLSLSLSLRLVCLRTPTVISVVVACGDGDWIGKYSAAMVLEWELACLIKRDLTCELSFSLSLPSCFYTTFNIHDSNCDLPFDLDLAHGGG 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1338892 1340795 + CmoCh10G002990.1 Cmo10g00299 389645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00299 414 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Cmo10g00299 414 MobiDBLite consensus disorder prediction 79 136 - -
Cmo10g00299 414 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Cmo10g00299 414 PANTHER DOF ZINC FINGER PROTEIN 4 16 307 - -
Cmo10g00299 414 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 307 IPR045174 GO:0003700|GO:0006355
Cmo10g00299 414 MobiDBLite consensus disorder prediction 1 21 - -
Cmo10g00299 414 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00299 Cmo13g00918 CCT
Cmo10g00299 Cmo11g00231 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00299 Cmo-Chr10:1338892 Cmo03g00889 Cmo-Chr3:6900423 1.78E-32 dispersed
Cmo10g00299 Cmo-Chr10:1338892 Cmo11g00231 Cmo-Chr11:1149128 1.25E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10444 PF02701 zf-Dof 6.30E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00299 - - bhj:120071666 447.588