Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00311 ATGTATGGTCAAGCAAATTATGCTCCTCCGTTCGGGCAGGGTCCTCAGAAACCATGGCCACCTGCATACCAACAGCGTGCTGTAGCACCTCCTCCTCCTACCTCATATGGTCAACCAGGCCCAACAATCCCATCACGTCCTATAACTCAACAAACACCTGCCCCCCCACCTCAGGCTGCGCAATCTCTACATCTATCTCAGCCGGGTTCCCATGGTCCACCACCTCCCCACTGTCAGGGTCCATCCATTCAAGTACGGCCTGGTGGGATTACAAATATCCGTCCAGCATATTTTCATACGTTTCCACCAGTCCATGGAAGCACACAAGTTTCTCTATTTAACTCCAGTGCTCAGCAGAATGTACAACTTTCACACTCGGGAGTTCAGAACATGCATCATGTCCTGCCTCCGCCACCGCCACCACTACCACCACCACCACTACCTCCTCATGCTCCCAATTCAAATTTATTACGGCCTCCGCAGCCTTCTACCGTAGGTCCTCTTCATGCTCCTCATGCTCATGCTCGAATTCATCCACCACTACCACCTCCTCATGCTCGAATTCATCCACCATTGCAACAAGGTGGTTTGCAGGTCTTTCCCTCGATTCCACAACTCCCAACAACATCCAATTTTCCTACTCCCTCTTCTTTTGGAGGAGTCATGCAATCAAATCTTGGAAGATCTCATTTGCTTGCAATGGCTCCTCCTCCACCACCATCCTCTCCTCCACCTATTCCACCTTCTCCCCCTCCTCCCACCTCGTCCTCTTCTTCAATTCCAGACCCAGATTCTTCCAACTTGTCTTGCCGGTCTGAATTAGATCCTAGTTCTACCGTTCATTACGGTAAAGACTTGGAACCCTCTGAAATTGATCAAGGATGCGCACCTCCCAGTCATTTAGGGGATAATGTGCCCATGCATGACGAACTTAGAAACTCACAAGTTGGTAATGGCCTCATGATGGTTTCTAATGTGGACAATGAGATATTGTCAGATAAAAATTTTGTGAAGGTTCTTCCTCCACCTCCACCTAAGCCAAAAGATGATAGAATTGTCAAGAAGATAGAAGTATTATGCAAGTTCATTGCCAATAACGGTTCCATTTTTGAAGACACAACTCGCCAAAAGGAATTTGGGAATCCAGAGTTTGGATTTTTATTTGGTGGTGAACCAGGAAGTGAATCTGCAGTCGGCCACGAGTATTTCCAGTGGATGAAGAAGAAATATAGTTTGGCTTCCAAAAATATAGCAATGAAAGAAAAATCTCCATTGAGATCTTCAAGAATTGAACCACAATCTGAGAACTTGACAGTGTCAGCGGCATCCATTTCACCTGTAAACTCTGACATGGAGATGGAAGATGACATTACCATAGCTGATATAGGAGAGGAAACTAGTCACTCATTTCCAATTCAAAGTTACGAGTGCAAATCGAGAAAAGAAGAGCATGATGCAAAGGATCAGTTACAAGAACCTGATGTTTTCAGAAGCTGCAGCCTGGAAAAGGAGAAGGTAGCTGAAGATGGAGGGCCAAAACTTCTGCTGGACCATGAAAAATCTGTCAGCATTGCAGCTTGCCAAGTTCACAGCCATGTCAGAAGTACTGCTGGAGTTACTGAACAGCCTCCAGGCGGCAGCCCATTTAGACTCATACAGGACTATGCTTCCGATGAAAATTCAGAAAGTGATGAGGAACCACATCATAAAGATGTCCATTTTGTTGCTACCTCATCTTCAACTCCAGCTTATTCTAAGACTTCCAACAAAGACACTGATAATTTGACTATTCTTGGATCAAAAGGTTCTTGCCAGGTTCAACGAGCTCAGTTTCTCTCAGAATCACCAAAACAGGTTTTTGATGCTAAAGAGGCAAATGTCAGGAAGACAGGGAATGAACAGAGTTACAATAACCAACAGAATCAAATTGGTTCCGGCTCTGGTTCTAAGTCTTTGAATGCAATGAATGGTCGTAGTATTGATGTTCCCCAAGATACTGACAAGTTACAAAAAGAAAATGATGCTGAACATAAGAAGTTGGGATCATCTCCTGTAAAAATAGATGAATTTGGGAGATTAGTCAGAGAAGGTGACAGTGATAGTGATTCAGATGATTCACACTATACAAGGAGACATAAGAATAGAAGAGCTAGAAATAGTAGTGAAAGTCGTTCTCCTGTTGATAGAAGGAGGGGACGAAGGAGTCCACGGAGAAGAAGGGAGAGGCGAAGCCGTTCTCGCAGTTGGTCTCCTCGTAACCACAGAGGCAGAAGCAGGTCTCCTGTCATCAGGCGTTCAAGTCAGTTTCGTCATGAGAATATGAGACGAGATAAGGGTATGATAGGAAAATGCTTTGACTTTCAGCGAGGTAGGTGCTATAGAGGAGCATCTTGTCGATATGAGCACCATGAGCCCCACAAGAACGATGGATCAAGATTCCATAGGAGCAAACATCTAGACGATCACCCAACTTCCAAGAATATAAAGATAAGAGAGGACACTATGAACATGTCTAGGGAAGTATCAGATCTTGGGTATATTAAAATCGAGAGTCAGGAGTGCATCCCACATAATGAGTCCCCAAAAGGCAATACTCATGAATGGAAGACAGATAGGCCTACTGGAGATCCGGATTCATTTGTAACTAAATGTCAAAGTTCTAGAGATAGAATTGGCATAATTCAAGAAGAATTAATTTATTCAGTACCAGTTGAGGCTGTCCACATTCATGTTAATGATAATGTTCAAGAAGCAGAGAAGTCTTATGAGCAATGTTCAGTTACGACCTCCGCTGCTGAGAAATTCCCTGATGATATTTCCACGAGCATGCTGACTTCTGTAGAGAATTCTGTGGCTCAGCAATCCAGCATGTTTGTTGCAGAGCTTCAAACCGCCAATGACCTCTCACACCAGATGGATGGTTCCTCTGTCTCCAATTTGTTACCTGATCAAGTAACTGCAGTTAACGCGAATAAAGCTCCTGAATGTGAACATGGTCTGGATAGAACTTCATCAATTAAGCCACATTTTGGTACCAGTTCTGCTAGTCAGCTACCTTTGACCTCACAAATTTTATCACAATCTCCAGTACCGAAACCATTATCTGCTACTGCTCCAGTTTGTGCTATTGATGATGCCCATCTTCTTAGAGAACTGCCTCCTCCACCACCTCTCATAATTTCGCGTGTAGCTAGTACTGAGGTTCCAGTGCCTGCCCCTTATAATTTTGTGTTACAAAACGTTTCCTTTCCTTCTAAATCTTCACTACCAGGAGGTTTTCATCCTCATCAAGATTTGGTATCCATTCAACCATCTCATTATCACAGTACCTCTTTACTGCCTCCGAAACCATTGTATGATTCAACATTGACTCCTGTAACTACCAAAGATGGTATGCCAATGCAATTTCATCAGAGTCATTTGTCTCAAGGAAGTGATTTGGGTTCTCAGTCTATTAAGAAATCCCAGCCATTGGAGTTGCATTCTCATTCTAAGCTCGGTGAGTCCCCAGTTCAAGAGCCTTATCGAGCTCCAATGCACATGGATGAAGTTAGATCAATTGCACCAGTTGCAAACAATCAACCTAGTCAACCTTTTGGATTCCCAAGCTTTCAGAATGAAGAAAACTTTGGGCGGACTTCTGTGGAGACGAATTCTTCAAGTTTTTTTCCTCACCGAAACTTTAATGATCATTCTGTGCCCTTTACAAATGCAAATATAATGCAATCTTCTGGTGACAATTTTCCTCCTAGTGAATTTCGAAGTTCATTTTCACAGTTGCATCCTTATTCACGGTTTCAACAGCCATTGTACACCTCACAACCTGCACATGATAGTTTGTTCCGTGAACCAAGCCAGATTGGTAGTATGTTTCAAAATTATCCCGATCCTCTAAGCAGGAACCATTCATCTTTGCTTCCTGATTTAGGGGGTTTGGGAATTACCTCTTACCATAATCCTTATGCATCTACTTTTGAGAAGCCACTTAGCTCCAGCTTCAGATCCAACATTTTGAACTTTGGAAATGATGCACCTAGTGGTGATATACGTAGTTCTACTTTCAATGTGAGCAATGTTCACGTTGATGGGCAAGGTGCTAATTATGTTGGAACAAGGCAGACAACTGCTTCACCAAATTCCACCAAACCTTTGGGGAAAGTCTTGCTCAGTACAGGTGGTGATCAGTATGATCCACTCTTTGACAGCATTGAGCCATCATTACCTATATCCAAGAAATCTGATTGTGGTCAAAAGCTGGAAAAAGAAAGGGAATCTTATACAATGACAAGCCTTGGTAGTTCCCATAAATTACTATATGTGGAGGAGAACAACAAGCATACAGAAGTTGCCGCTGTGGCTTCAACTACTACTCTGGAGAATGATGAATTTGGAGAGACAGCAGATGCAGAGGCTGGTGCTGTTGAGGATGACCTTGACGACGAAGAAAATTTATCAGGAGAAATCGAAATTGATCAGGTTAAGTCCTCAGAGAAGAGCAAGAAGTCCAAAGGTTCCAGGTCACTGAAGCTTTTCAGGATTGCTATTGCCGATTTTGTTAAGGAAATTTTAAAACCATCATGGCGACAGGGCAATATGAGCAAGGAAGCCTTTAAGACAATTGTCAAGAAGACTGTTGACAAGGTATCTGGAGCTATGAAGAGTCACCAAATACCCAAGTCTCAAGCAAAGATAAATCGATACATTGATTCATCACAACGAAAACTGACAAAGCTTGTTATGGGTTATGTTGACAAGAATTATGCATTCATCTTGGACATCTGCAAGGGATGGATAGGTGATAGTTCCACGGTGTTGGTTGAAATGTCGGTCAGAGGTCATGGTCCTGTGGATGCTGGAGAATTGATGAAGCTTGCAATATGCTGA 4884 43.1 MYGQANYAPPFGQGPQKPWPPAYQQRAVAPPPPTSYGQPGPTIPSRPITQQTPAPPPQAAQSLHLSQPGSHGPPPPHCQGPSIQVRPGGITNIRPAYFHTFPPVHGSTQVSLFNSSAQQNVQLSHSGVQNMHHVLPPPPPPLPPPPLPPHAPNSNLLRPPQPSTVGPLHAPHAHARIHPPLPPPHARIHPPLQQGGLQVFPSIPQLPTTSNFPTPSSFGGVMQSNLGRSHLLAMAPPPPPSSPPPIPPSPPPPTSSSSSIPDPDSSNLSCRSELDPSSTVHYGKDLEPSEIDQGCAPPSHLGDNVPMHDELRNSQVGNGLMMVSNVDNEILSDKNFVKVLPPPPPKPKDDRIVKKIEVLCKFIANNGSIFEDTTRQKEFGNPEFGFLFGGEPGSESAVGHEYFQWMKKKYSLASKNIAMKEKSPLRSSRIEPQSENLTVSAASISPVNSDMEMEDDITIADIGEETSHSFPIQSYECKSRKEEHDAKDQLQEPDVFRSCSLEKEKVAEDGGPKLLLDHEKSVSIAACQVHSHVRSTAGVTEQPPGGSPFRLIQDYASDENSESDEEPHHKDVHFVATSSSTPAYSKTSNKDTDNLTILGSKGSCQVQRAQFLSESPKQVFDAKEANVRKTGNEQSYNNQQNQIGSGSGSKSLNAMNGRSIDVPQDTDKLQKENDAEHKKLGSSPVKIDEFGRLVREGDSDSDSDDSHYTRRHKNRRARNSSESRSPVDRRRGRRSPRRRRERRSRSRSWSPRNHRGRSRSPVIRRSSQFRHENMRRDKGMIGKCFDFQRGRCYRGASCRYEHHEPHKNDGSRFHRSKHLDDHPTSKNIKIREDTMNMSREVSDLGYIKIESQECIPHNESPKGNTHEWKTDRPTGDPDSFVTKCQSSRDRIGIIQEELIYSVPVEAVHIHVNDNVQEAEKSYEQCSVTTSAAEKFPDDISTSMLTSVENSVAQQSSMFVAELQTANDLSHQMDGSSVSNLLPDQVTAVNANKAPECEHGLDRTSSIKPHFGTSSASQLPLTSQILSQSPVPKPLSATAPVCAIDDAHLLRELPPPPPLIISRVASTEVPVPAPYNFVLQNVSFPSKSSLPGGFHPHQDLVSIQPSHYHSTSLLPPKPLYDSTLTPVTTKDGMPMQFHQSHLSQGSDLGSQSIKKSQPLELHSHSKLGESPVQEPYRAPMHMDEVRSIAPVANNQPSQPFGFPSFQNEENFGRTSVETNSSSFFPHRNFNDHSVPFTNANIMQSSGDNFPPSEFRSSFSQLHPYSRFQQPLYTSQPAHDSLFREPSQIGSMFQNYPDPLSRNHSSLLPDLGGLGITSYHNPYASTFEKPLSSSFRSNILNFGNDAPSGDIRSSTFNVSNVHVDGQGANYVGTRQTTASPNSTKPLGKVLLSTGGDQYDPLFDSIEPSLPISKKSDCGQKLEKERESYTMTSLGSSHKLLYVEENNKHTEVAAVASTTTLENDEFGETADAEAGAVEDDLDDEENLSGEIEIDQVKSSEKSKKSKGSRSLKLFRIAIADFVKEILKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQIPKSQAKINRYIDSSQRKLTKLVMGYVDKNYAFILDICKGWIGDSSTVLVEMSVRGHGPVDAGELMKLAIC 1627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1386219 1393191 + CmoCh10G003110.1 Cmo10g00311 389657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 664 710 - -
Cmo10g00311 1627 PANTHER EXPRESSED PROTEIN 1 1585 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 259 276 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 574 594 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 198 224 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 803 824 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 233 258 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 629 660 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 536 594 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 136 311 - -
Cmo10g00311 1627 Pfam Surp module 356 407 IPR000061 GO:0003723|GO:0006396
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 1 96 - -
Cmo10g00311 1627 SUPERFAMILY Surp module (SWAP domain) 334 410 IPR035967 GO:0003723|GO:0006396
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 730 761 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 855 880 - -
Cmo10g00311 1627 SMART surpneu2 353 412 IPR000061 GO:0003723|GO:0006396
Cmo10g00311 1627 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1585 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 860 876 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 614 774 - -
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 1129 1150 - -
Cmo10g00311 1627 ProSiteProfiles Zinc finger C3H1-type profile. 783 805 IPR000571 GO:0046872
Cmo10g00311 1627 ProSiteProfiles SURP motif repeat profile. 355 403 IPR000061 GO:0003723|GO:0006396
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 136 156 - -
Cmo10g00311 1627 Gene3D Surp module 352 412 IPR035967 GO:0003723|GO:0006396
Cmo10g00311 1627 MobiDBLite consensus disorder prediction 24 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00311 - - - csv:101219633 2177.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00311 Cmo11g00217 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01629 Cmo-Chr1:12384127 Cmo10g00311 Cmo-Chr10:1386219 7.48E-07 dispersed
Cmo09g00525 Cmo-Chr9:2456540 Cmo10g00311 Cmo-Chr10:1386219 3.70E-06 dispersed
Cmo10g00311 Cmo-Chr10:1386219 Cmo11g00217 Cmo-Chr11:1086198 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00311 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.451257 0.0 0.350764 0.0 0.0 0.0