Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00322 ATGAGTAAGGGCACTTCCAACCGACTTCCTCAAAGAGAACTCATCCAAGCGTTCAAGGCCGCCGATCAAGTCCTCGGTGAATTGAAGTTCGATTTGAATTCGAGTAAAGAACGTGAGTTTCAAATTGCACTTAAGAACTTGACTACAGAATCGGAGTGTTTGGAAGTGGTTCTGAATAAAGCAATTAGACTCTCTCCTTTTCTCTACACTTCTCTCTTTCTGCTTGTGTGTGTGGCCGTGAGAGCCTTCTTCTGGCCACTATCTCTGAGCTTTGTAATCATGTCTTGGGTTATGCCTGTTTTAGCTATTGGGCTTCTTATTCTGGCCATGACTGGCCATTCAAGTGCAACATGGTGCGTTTGCAAGGACGGAATAGGTGATACTGCTCTCCAGAAGACAATTGACTATGCTTGTGGAGCTGGGGCTGACTGTCTCCCTATTCATCAAAAGGGGGGCTGTTTCGCTCCCGACACGGTCAAGGCCCATTGTTCCTATGCTGCTAACAGCTACTTTCAGAGGAAGGGTCAAGCTCCTGGTTCCTGTGATTTTTCTGGCACAGCCATGGTCACCACTACTGACCCCAGCATTACAGGCTGCGTTTATCCTTCTAGCGCCAGCCCCGTAAACAGTGGCACTGTTCCAGTAACTGGAACACCAACCACCACCAGCCCGGGCACTGGATCAACTCCCACAACCAATACTCCATTTGGTTCTACAACCCCCACCGGCGTCATCGGAGGGAATGGCTACAGCAGTGGAAGCAACAGTTTAGGACCATCAGGCGTCGGCGGGATGAACTCCGACTACAGTGACAGTGGATCAAGACTCAAACTCACTCTAATTGCCAATGCAGTAGCTTATTTGTTCACTCTCTTGTTCTGGTGGGTAGCATGTGATGTTCCTGTTCTTGCTGTACTACTGGTTCTGGTCTTAGACAGCTTTGTTTTTTTAAATTTGTTCTTTCGTCCACTTAAGTCTCTCCCTCACCACTTGATGCCAAAAACAAAATGGGAAAAAGTTGGCCTCCACATTGCTTGTTTTGGATGGACTTTTCTTCATACTCTACCTACTGCGAAATTCAATTTCGGAAAGTTTTCGTCAGTTTTGGGACTTTGCTGGTTAGATTTTTCTTTCTTTTTTTGGAGAATGGACGTGCATGGCTCTGGACCTAGGAAATTCGACGGAGGCAATGGCGATTCGCGGAGGGTAGGGGTTTTGTACGACGAGAGGATGTGCAAGCATCACACGCCCGACGGAGATTACCATCCTGAGAATCCCAATCGAATTAGGGCCATTTGGAACAAGCTACAGAGCTCCGGCATTCTTCAGAGGTGTGTGGTCTTGAATGGGAAAGAAGCAGAAGATAAGCATATTTTGGCAGTACACTCCAAAAATCATGTTGACTTGATTAAGAATATAAGCTCCAAAGAGTTTGATTCACGAAGAGATAAGATTGCCGCACAACTTAACTCCATATACTTTAATAAAGGATCATCAGAAGCTGCTTATCTAGCTGCTGGCTCTGTCATAGATGTTGCTGAAAGAGTAGCTCAAGGAGATTTAGATTCCGGAATTGCCATTGTGAGGCCACCGGGTCATCATGCCGAACATGATGAAGCTATGGGGTTCTGTTTGTTCAACAATATAGCTGTGGCAGCAAGCTTTATTTTGAATGAACGACTAGATTTGGGTATTAAGAAGATATTAATTGTTGATTGGGATGTTCATCATGGCAATGCAACACAAAAGATGTTCTGGAGGGATCCCCGTGTTTTGTTCTTCTCCGTTCACCGGCACGAGTTCGGAAGTTTTTATCCCGCCACAGATGATGGTTACTATACCATGGTTGGAGAAGGACCAGGCGCAGGATATAATATAAATGTCCCTTGGGAGAATGGACAATGTCGGGATGCTGATTACCTAGCTGTTTGGGACCATGTCTTGCTTCCGGTTGCTAAGGAATATAGTCCTGACATGATCATAGTCTCTGCCGGATTTGATGCAGCTGTTGGAGATCCTCTAGGTGGTTGCTGTGTCACACCGTATGGATACTCAATTATGTTGAAAAAGTTGATGAATCTTGGTCAAGGAAAGATTGTATTGGCATTGGAAGGGGGATATAATCTTGATTCTATAGCAACTTCAATGCTTGCCTGTGCGGAACTTCTGGTTGATGGAAGAACTATGAACAATTCTTCAGAGACTTGTCCATTTGAGTCAACATGGCGAGTGATCCAAGCAGTTCGCCGAGAATTGAGTCCTTTTTGGCCAATGCTTTCGGAAGAACTACCAGATAATTTAACCAGTAAAAAAGTGCCAGTCCCGGAGGTATTGCTTTCAAGCTCTGATTCGGAGGATGAAGCTTCCGATTCTCGATTAAAAAGCCTCGAGGAAATTCTTCAGGGTATCACACTTTCACAAGTGGAAGTTAAGGAAGACAGTCAGGGTCAAGCGGTTAATGTTACTATCCCTTGGAGATTGGAGCTCTCAAAAACTGATATCTGGTATGCTTCATTTGGATCAAATATGTGGCGCCCAAGATTCCTCTGTTATATCAAAGGAGGACAGGTTGAGGGTATGAAAAAACCGTGTACGGGTTCAATGGATAAGACACCACCAAAAGGGATGCTGTGGAAAACTTTTCCTCGCCGTCTATTTTTCGGCCATGAATATACCAATACATGGGGCCAAGGAGGAGCTGCTTTTCTTCATCCTGAAAGCAACAGTGATGAGAAATCTTTCTTGTGCTTGTATAGAATAACGCTAGAGCAATTCAACGATGTTTTGTATCAAGAAAACAGTGGGAGTGGCTTCCTTTCTGATAACCCTTTATTGGATATAGCTAATTTGAACAAACTCACAGGCAACGCTTCCACATCTATTGAGATTTCAACTGGGCAAGGATGGTACCACAACCTTGTATACTTGGGGAAAGAACAGGAACTTCCGATAGTAACTATGACATGTTCGCATTTGGATATGGAAGACTTCAAATCTGGAAAGGTTCCTCTCTGTGCACCAGCCAAAGGGTACGTTGATACCCTTGTTAAAGGCCTTGCAGAAGGACCACTTTCGAAAGAGGAAGCTTTGGTTTACATTCAGAAGGCCGTAACTAAGCCACTGTAA 3126 44.66 MSKGTSNRLPQRELIQAFKAADQVLGELKFDLNSSKEREFQIALKNLTTESECLEVVLNKAIRLSPFLYTSLFLLVCVAVRAFFWPLSLSFVIMSWVMPVLAIGLLILAMTGHSSATWCVCKDGIGDTALQKTIDYACGAGADCLPIHQKGGCFAPDTVKAHCSYAANSYFQRKGQAPGSCDFSGTAMVTTTDPSITGCVYPSSASPVNSGTVPVTGTPTTTSPGTGSTPTTNTPFGSTTPTGVIGGNGYSSGSNSLGPSGVGGMNSDYSDSGSRLKLTLIANAVAYLFTLLFWWVACDVPVLAVLLVLVLDSFVFLNLFFRPLKSLPHHLMPKTKWEKVGLHIACFGWTFLHTLPTAKFNFGKFSSVLGLCWLDFSFFFWRMDVHGSGPRKFDGGNGDSRRVGVLYDERMCKHHTPDGDYHPENPNRIRAIWNKLQSSGILQRCVVLNGKEAEDKHILAVHSKNHVDLIKNISSKEFDSRRDKIAAQLNSIYFNKGSSEAAYLAAGSVIDVAERVAQGDLDSGIAIVRPPGHHAEHDEAMGFCLFNNIAVAASFILNERLDLGIKKILIVDWDVHHGNATQKMFWRDPRVLFFSVHRHEFGSFYPATDDGYYTMVGEGPGAGYNINVPWENGQCRDADYLAVWDHVLLPVAKEYSPDMIIVSAGFDAAVGDPLGGCCVTPYGYSIMLKKLMNLGQGKIVLALEGGYNLDSIATSMLACAELLVDGRTMNNSSETCPFESTWRVIQAVRRELSPFWPMLSEELPDNLTSKKVPVPEVLLSSSDSEDEASDSRLKSLEEILQGITLSQVEVKEDSQGQAVNVTIPWRLELSKTDIWYASFGSNMWRPRFLCYIKGGQVEGMKKPCTGSMDKTPPKGMLWKTFPRRLFFGHEYTNTWGQGGAAFLHPESNSDEKSFLCLYRITLEQFNDVLYQENSGSGFLSDNPLLDIANLNKLTGNASTSIEISTGQGWYHNLVYLGKEQELPIVTMTCSHLDMEDFKSGKVPLCAPAKGYVDTLVKGLAEGPLSKEEALVYIQKAVTKPL 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1445053 1456482 - CmoCh10G003220.1 Cmo10g00322 389668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00322 1041 MobiDBLite consensus disorder prediction 210 239 - -
Cmo10g00322 1041 SUPERFAMILY Arginase/deacetylase 401 759 IPR023696 -
Cmo10g00322 1041 Gene3D Histone deacetylase domain 397 773 IPR037138 -
Cmo10g00322 1041 Gene3D - 827 1038 - -
Cmo10g00322 1041 PANTHER BNAA09G05590D PROTEIN 395 991 - -
Cmo10g00322 1041 PANTHER HISTONE DEACETYLASE 395 991 - -
Cmo10g00322 1041 Pfam X8 domain 117 188 IPR012946 -
Cmo10g00322 1041 Pfam Histone deacetylase domain 422 721 IPR023801 -
Cmo10g00322 1041 PRINTS Histone deacetylase superfamily signature 657 667 IPR000286 -
Cmo10g00322 1041 PRINTS Histone deacetylase superfamily signature 530 553 IPR000286 -
Cmo10g00322 1041 Gene3D - 112 206 - -
Cmo10g00322 1041 SMART X8_cls 117 201 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00322 K11406 HDAC4_5; histone deacetylase 4/5 [EC:3.5.1.98] - csv:101207819 1147.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00322 Cmo-Chr10:1445053 Cmo12g00078 Cmo-Chr12:426069 2.47E-45 dispersed
Cmo20g00687 Cmo-Chr20:3387479 Cmo10g00322 Cmo-Chr10:1445053 8.97E-27 dispersed
Cmo03g01087 Cmo-Chr3:8117733 Cmo10g00322 Cmo-Chr10:1445053 7.31E-44 transposed
Cmo11g00904 Cmo-Chr11:4644704 Cmo10g00322 Cmo-Chr10:1445053 7.31E-75 transposed
Cmo13g00366 Cmo-Chr13:4695945 Cmo10g00322 Cmo-Chr10:1445053 6.02E-42 transposed
Cmo18g00007 Cmo-Chr18:24345 Cmo10g00322 Cmo-Chr10:1445053 3.47E-54 transposed
Cmo10g00322 Cmo-Chr10:1445053 Cmo11g00205 Cmo-Chr11:1011697 5.37E-81 wgd
Cmo10g00322 Cmo-Chr10:1445053 Cmo18g01130 Cmo-Chr18:11624009 8.31E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g359 Blo04g00809 . . Bda15g00544 Bpe12g00667 . . . . . Cma10g00300 . Car10g00285 . . . . . . . . . . . . . . . . . . . . Cone13ag0296 . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00322 . . . . . . . . . . . . . . . . . . . . . . Csa01g00287 Chy02g02448 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010219 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00322 Cmo_Chr10 FPKM 0.0 0.0 22.92029 23.991879 24.360493 28.190994 25.623186 8.148408 8.381567 8.516127