Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00326 ATGGCGACGCCGTTGACAGGGCTACATCACAGGGACGGTGGCGGAGGGGTGGCTTTTTTGGCTAATTCTGTTAATAAAATGGATTCCGCGTCGTCTCCGTCGTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCTATTCGGAAAGAGCTCGATACGCTACACCGGCTGGCCATGGCATTTGCCATCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATATCATTTTCTTAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTATTTGATCAACTTTTTGAGCTTCTTAATTCCAATACACGAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCACATTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGATTTCTTCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAACTAATGTAGTCCCCGAGGAAAAGCTTCTTCAACAGGTCATATTTACTTGGATGGAAGAGAGAAGTTGTGACACCGTATCAACAAGTTGCTTTGATGATTCTCCAGTTGTACATCATTCAGATCCTACTACTCATACATCAAATCATCAAACAGGAAATGTAAATTGTGCTTGTGCATTGACCAGCCATGGGAAAAGGAAATATTTGGAGTCCAGTTCTGATACATCAGATTATGTGGTAACTCATCCAATTAATGAAATACTGTTTTGGCATAATGCCATCGAAAGGGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAAGTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTATCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTTTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGTTGCCTGATTGAAAATATTCAAAGGGCAGGGGCTAGTTCTACTTCAAGAGATGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATAGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCAGTTGCTAGAAAGCACTTTAGTTGCAAGAGACAACGGGAATTGTTGTATCAAAGTTTGTGTATGATGCCTTTGAAATTGATTGAACGAGTCTTGCCATGGCTGGTAGGATCATTAAAAGAAGATGAGGCTAGAGATTTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTTTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGCAATAATGGTTTGTGCATATCTTCAAGAGCAGTTGGCTGTTGTGCAGTTCAAAGGTTACCTGATATTGAAGAAGACACTGTTCAATCGCCTTGTTCATGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAATCCGATCCAGAAGAAACTAATGTTCATGTTAAGAGGCCAGCCATACGGAATGTTCCTATGTCATGCAGACTTTGTGATGGCCGTATTGCTTCAGAGACTGTTAATGTCCAGCAACAGTGTTGTAGTGATCAGTCCTGCCGTGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCTCATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCTTCTCTCAATTCCAGCCTTTTTTCATGGGAAACAGATAATGCCACTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCGATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTGGTGATTGTGATGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATCGCGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCATATACGCTCGACCATAAGCAGGAGGAAAAACTATTTGAGGATATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTCTGCATGAGGTTCAGTTAGATGAGAGTCATTCTAGAAGTGATGTAGGTTCTGTTAATATGGCGGGGAAGGATTGTAATAGAATGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAGCTTTGGCCGCTGTTTGGGAAACACTTTTCCTTCGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACAACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAAGACGAACAGAATACCATGATGGATACGTGGAAGCAGGCCACGAGAAACACCATGTTCAACGAATGGCTCAACGATTGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCTGAGAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGCTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTGCCTCAAGCAAATATAGAAGACAATTCCAATGGTGAAGATGCAGCAGGACGAACACCATCTTTTCGCTGTGTCGAGAAAAAGATATTTGGGTGTGAACATTACACTAGAAATTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGATTTTGTCATGATAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACAATTCAAGCAGTTGGGCCAGTATGCACTACACCTTCTTGCAATGGATTATCAATGGCGAAATACTATTGCAATATTTGTAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGTCACAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCCTTGTTGGCTGCTGAGGAGCTGCCAGAGGAGTACAGGGAACGTTGCCAGGACATACTGTGCAACGACTGTGAACGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGCGAGTTCTGCGGATCATACAACACCCGGGTAATCAAGAACGATGCCGCATATGCCGCTGAATGCCCCTCTTCCAATCAATAA 3777 42.31 MATPLTGLHHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRKELDTLHRLAMAFAIGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDQLFELLNSNTRNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFTLEEQASLVWQFFCSIPVYMMAQFLPWISSSVSPDEFQDLQKCLTNVVPEEKLLQQVIFTWMEERSCDTVSTSCFDDSPVVHHSDPTTHTSNHQTGNVNCACALTSHGKRKYLESSSDTSDYVVTHPINEILFWHNAIERELNDIAEEARKIQLSGKFSNLSTFNERLQFIAEVCIYHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNEFSCLIENIQRAGASSTSRDEFYVKLCSHADQIIDTIKRHFHNEEVQVLPVARKHFSCKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDFLKNMQLAAPAKDTALVTLFSGWACKARNNGLCISSRAVGCCAVQRLPDIEEDTVQSPCSCAPALIAREGPKSDPEETNVHVKRPAIRNVPMSCRLCDGRIASETVNVQQQCCSDQSCRVPALGVNSKNLGLSSIFSSKSMRSLSPSSCAPSLNSSLFSWETDNATSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLGDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVQLDESHSRSDVGSVNMAGKDCNRMYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSFEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATRNTMFNEWLNDCWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDNSNGEDAAGRTPSFRCVEKKIFGCEHYTRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQAVGPVCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCNDCERKGTSRFHWLYHKCEFCGSYNTRVIKNDAAYAAECPSSNQ 1258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1467626 1477012 - CmoCh10G003260.1 Cmo10g00326 389672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00326 1258 Pfam Hemerythrin HHE cation binding domain 53 179 IPR012312 -
Cmo10g00326 1258 Pfam Hemerythrin HHE cation binding domain 309 442 IPR012312 -
Cmo10g00326 1258 Pfam Hemerythrin HHE cation binding domain 661 824 IPR012312 -
Cmo10g00326 1258 Pfam CHY zinc finger 1008 1083 IPR008913 GO:0008270
Cmo10g00326 1258 CDD Hr-like 51 177 - -
Cmo10g00326 1258 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1250 - -
Cmo10g00326 1258 Gene3D nmb1532 protein domain like 46 196 - -
Cmo10g00326 1258 Gene3D nmb1532 protein domain like 312 459 - -
Cmo10g00326 1258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1130 1181 IPR013083 -
Cmo10g00326 1258 Gene3D - 1208 1248 - -
Cmo10g00326 1258 CDD RING-H2_Pirh2 1136 1179 - -
Cmo10g00326 1258 ProSiteProfiles Zinc finger RING-type profile. 1137 1179 IPR001841 -
Cmo10g00326 1258 Coils Coil 318 338 - -
Cmo10g00326 1258 ProSiteProfiles Zinc finger CTCHY-type profile. 1073 1136 IPR017921 -
Cmo10g00326 1258 PANTHER CHY ZINC FINGER PROTEIN 30 1250 - -
Cmo10g00326 1258 SUPERFAMILY RING/U-box 1136 1182 - -
Cmo10g00326 1258 Gene3D nmb1532 protein domain like 656 886 - -
Cmo10g00326 1258 ProSiteProfiles Zinc finger CHY-type profile. 1001 1070 IPR008913 GO:0008270
Cmo10g00326 1258 CDD Hr-like 663 823 - -
Cmo10g00326 1258 SUPERFAMILY Zinc hairpin stack 1074 1130 IPR037275 -
Cmo10g00326 1258 CDD Hr-like 313 441 - -
Cmo10g00326 1258 SUPERFAMILY CHY zinc finger-like 1002 1064 IPR037274 GO:0008270
Cmo10g00326 1258 Pfam Zinc-ribbon 1184 1241 IPR039512 -
Cmo10g00326 1258 SMART ring_2 1137 1178 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00326 Cmo11g00287 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00185 Cmo-Chr10:838715 Cmo10g00326 Cmo-Chr10:1467626 5.36E-12 dispersed
Cmo10g00326 Cmo-Chr10:1467626 Cmo14g01678 Cmo-Chr14:13218745 5.41E-53 dispersed
Cmo10g00326 Cmo-Chr10:1467626 Cmo11g00287 Cmo-Chr11:1390582 0 wgd
Cmo10g00326 Cmo-Chr10:1467626 Cmo04g01568 Cmo-Chr4:8015730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00326 K16276 - csv:101215023 2347.78