Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00326 | ATGGCGACGCCGTTGACAGGGCTACATCACAGGGACGGTGGCGGAGGGGTGGCTTTTTTGGCTAATTCTGTTAATAAAATGGATTCCGCGTCGTCTCCGTCGTCGCCGAATGATTGTTTGAGGAGCTCCGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCTATTCGGAAAGAGCTCGATACGCTACACCGGCTGGCCATGGCATTTGCCATCGGCCAGAGAGCAGATATTCGGCCGCTATTTGAACGATATCATTTTCTTAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAGACATATTCCCTTGAACACAAGGGTGAAAGCAATCTATTTGATCAACTTTTTGAGCTTCTTAATTCCAATACACGAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCACATTGGAAGAGCAGGCATCTCTCGTTTGGCAGTTCTTCTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGATTTCTTCATCTGTTTCACCTGATGAATTTCAGGATCTACAGAAATGTTTAACTAATGTAGTCCCCGAGGAAAAGCTTCTTCAACAGGTCATATTTACTTGGATGGAAGAGAGAAGTTGTGACACCGTATCAACAAGTTGCTTTGATGATTCTCCAGTTGTACATCATTCAGATCCTACTACTCATACATCAAATCATCAAACAGGAAATGTAAATTGTGCTTGTGCATTGACCAGCCATGGGAAAAGGAAATATTTGGAGTCCAGTTCTGATACATCAGATTATGTGGTAACTCATCCAATTAATGAAATACTGTTTTGGCATAATGCCATCGAAAGGGAGTTGAATGACATAGCTGAGGAGGCTAGGAAGATACAACTTTCTGGGAAGTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTATCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTTTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGTTGCCTGATTGAAAATATTCAAAGGGCAGGGGCTAGTTCTACTTCAAGAGATGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATAGATACCATTAAGAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCAGTTGCTAGAAAGCACTTTAGTTGCAAGAGACAACGGGAATTGTTGTATCAAAGTTTGTGTATGATGCCTTTGAAATTGATTGAACGAGTCTTGCCATGGCTGGTAGGATCATTAAAAGAAGATGAGGCTAGAGATTTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATACTGCTTTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGCAATAATGGTTTGTGCATATCTTCAAGAGCAGTTGGCTGTTGTGCAGTTCAAAGGTTACCTGATATTGAAGAAGACACTGTTCAATCGCCTTGTTCATGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAATCCGATCCAGAAGAAACTAATGTTCATGTTAAGAGGCCAGCCATACGGAATGTTCCTATGTCATGCAGACTTTGTGATGGCCGTATTGCTTCAGAGACTGTTAATGTCCAGCAACAGTGTTGTAGTGATCAGTCCTGCCGTGTTCCAGCTTTAGGAGTAAACAGCAAGAATCTGGGGTTAAGTTCTATTTTCTCATCCAAGTCTATGCGATCCTTATCTCCCAGCTCTTGTGCACCTTCTCTCAATTCCAGCCTTTTTTCATGGGAAACAGATAATGCCACTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCGATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTGGTGATTGTGATGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATCGCGCTCATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCATATACGCTCGACCATAAGCAGGAGGAAAAACTATTTGAGGATATTTCATGTGTTCTCTCTGAGATTTCACTCCTCCATGAAAGTCTGCATGAGGTTCAGTTAGATGAGAGTCATTCTAGAAGTGATGTAGGTTCTGTTAATATGGCGGGGAAGGATTGTAATAGAATGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACCCTGGATCAGCATATTTTTAGGGAAGAACTTGAGCTTTGGCCGCTGTTTGGGAAACACTTTTCCTTCGAGGAGCAAGACAAAATAGTTGGTCGTATTATTGGGACAACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCACTTACTCAAGACGAACAGAATACCATGATGGATACGTGGAAGCAGGCCACGAGAAACACCATGTTCAACGAATGGCTCAACGATTGTTGGAGAGGGACTGCTTCGTCTACTTTAAATGGTGAAACATCGGAAGCTTGTGTTGCTGAGAAAGATTCTGGGCTCATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGCTGGAAAGATATTTTTCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCGACTCTTGATCCAAGGAGAAAAGCATATCTTGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTGCCTCAAGCAAATATAGAAGACAATTCCAATGGTGAAGATGCAGCAGGACGAACACCATCTTTTCGCTGTGTCGAGAAAAAGATATTTGGGTGTGAACATTACACTAGAAATTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGATTTTGTCATGATAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGTCTAACAATTCAAGCAGTTGGGCCAGTATGCACTACACCTTCTTGCAATGGATTATCAATGGCGAAATACTATTGCAATATTTGTAAATTTTTTGATGATGAAAGGACTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGTCACAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGTTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCGCTACCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCCTACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCCTTGTTGGCTGCTGAGGAGCTGCCAGAGGAGTACAGGGAACGTTGCCAGGACATACTGTGCAACGACTGTGAACGGAAAGGCACATCGCGGTTCCATTGGCTATATCATAAATGCGAGTTCTGCGGATCATACAACACCCGGGTAATCAAGAACGATGCCGCATATGCCGCTGAATGCCCCTCTTCCAATCAATAA | 3777 | 42.31 | MATPLTGLHHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRKELDTLHRLAMAFAIGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDQLFELLNSNTRNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFTLEEQASLVWQFFCSIPVYMMAQFLPWISSSVSPDEFQDLQKCLTNVVPEEKLLQQVIFTWMEERSCDTVSTSCFDDSPVVHHSDPTTHTSNHQTGNVNCACALTSHGKRKYLESSSDTSDYVVTHPINEILFWHNAIERELNDIAEEARKIQLSGKFSNLSTFNERLQFIAEVCIYHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNEFSCLIENIQRAGASSTSRDEFYVKLCSHADQIIDTIKRHFHNEEVQVLPVARKHFSCKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDFLKNMQLAAPAKDTALVTLFSGWACKARNNGLCISSRAVGCCAVQRLPDIEEDTVQSPCSCAPALIAREGPKSDPEETNVHVKRPAIRNVPMSCRLCDGRIASETVNVQQQCCSDQSCRVPALGVNSKNLGLSSIFSSKSMRSLSPSSCAPSLNSSLFSWETDNATSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLGDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHEVQLDESHSRSDVGSVNMAGKDCNRMYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSFEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATRNTMFNEWLNDCWRGTASSTLNGETSEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDNSNGEDAAGRTPSFRCVEKKIFGCEHYTRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQAVGPVCTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCNDCERKGTSRFHWLYHKCEFCGSYNTRVIKNDAAYAAECPSSNQ | 1258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1467626 | 1477012 | - | CmoCh10G003260.1 | Cmo10g00326 | 389672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00326 | 1258 | Pfam | Hemerythrin HHE cation binding domain | 53 | 179 | IPR012312 | - | |
Cmo10g00326 | 1258 | Pfam | Hemerythrin HHE cation binding domain | 309 | 442 | IPR012312 | - | |
Cmo10g00326 | 1258 | Pfam | Hemerythrin HHE cation binding domain | 661 | 824 | IPR012312 | - | |
Cmo10g00326 | 1258 | Pfam | CHY zinc finger | 1008 | 1083 | IPR008913 | GO:0008270 | |
Cmo10g00326 | 1258 | CDD | Hr-like | 51 | 177 | - | - | |
Cmo10g00326 | 1258 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 30 | 1250 | - | - | |
Cmo10g00326 | 1258 | Gene3D | nmb1532 protein domain like | 46 | 196 | - | - | |
Cmo10g00326 | 1258 | Gene3D | nmb1532 protein domain like | 312 | 459 | - | - | |
Cmo10g00326 | 1258 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1130 | 1181 | IPR013083 | - | |
Cmo10g00326 | 1258 | Gene3D | - | 1208 | 1248 | - | - | |
Cmo10g00326 | 1258 | CDD | RING-H2_Pirh2 | 1136 | 1179 | - | - | |
Cmo10g00326 | 1258 | ProSiteProfiles | Zinc finger RING-type profile. | 1137 | 1179 | IPR001841 | - | |
Cmo10g00326 | 1258 | Coils | Coil | 318 | 338 | - | - | |
Cmo10g00326 | 1258 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1073 | 1136 | IPR017921 | - | |
Cmo10g00326 | 1258 | PANTHER | CHY ZINC FINGER PROTEIN | 30 | 1250 | - | - | |
Cmo10g00326 | 1258 | SUPERFAMILY | RING/U-box | 1136 | 1182 | - | - | |
Cmo10g00326 | 1258 | Gene3D | nmb1532 protein domain like | 656 | 886 | - | - | |
Cmo10g00326 | 1258 | ProSiteProfiles | Zinc finger CHY-type profile. | 1001 | 1070 | IPR008913 | GO:0008270 | |
Cmo10g00326 | 1258 | CDD | Hr-like | 663 | 823 | - | - | |
Cmo10g00326 | 1258 | SUPERFAMILY | Zinc hairpin stack | 1074 | 1130 | IPR037275 | - | |
Cmo10g00326 | 1258 | CDD | Hr-like | 313 | 441 | - | - | |
Cmo10g00326 | 1258 | SUPERFAMILY | CHY zinc finger-like | 1002 | 1064 | IPR037274 | GO:0008270 | |
Cmo10g00326 | 1258 | Pfam | Zinc-ribbon | 1184 | 1241 | IPR039512 | - | |
Cmo10g00326 | 1258 | SMART | ring_2 | 1137 | 1178 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00326 | Cmo11g00287 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00185 | Cmo-Chr10:838715 | Cmo10g00326 | Cmo-Chr10:1467626 | 5.36E-12 | dispersed | |
Cmo10g00326 | Cmo-Chr10:1467626 | Cmo14g01678 | Cmo-Chr14:13218745 | 5.41E-53 | dispersed | |
Cmo10g00326 | Cmo-Chr10:1467626 | Cmo11g00287 | Cmo-Chr11:1390582 | 0 | wgd | |
Cmo10g00326 | Cmo-Chr10:1467626 | Cmo04g01568 | Cmo-Chr4:8015730 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00326 | K16276 | - | csv:101215023 | 2347.78 |