Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00329 ATGGAGACGTTTCTGCTGCGGATCCATTTTCGGAACGCCGCCGTGCTCGTCACCTTCGCCACCGCCTTCCTCCTCCGCTTTCGGCCGTCTCTCGCCGACGATAACGACGACTGTAAGATAGGCACGTGTCCTTTTCTTTTACCTCCTCCGCCAGACAATAGCGACGACATCAAAAAGAAGATTATCATTGGCACATGCACTGGTTTTGGAGCCTTGCTTTTAACCTTACTTGTTCTTGGCATCTGCTACCGATGGCGCCAGCTCCGTCGTAAAAGGTCTCACATGCTGCCATACGTGCAACGGAGCGTTCTCTCGAATCCCCCGTCCGTGGAAGAAGCTGAGAATGGAGGTACCTACTTGGGCGTTCACCTCTTCTCCTATAAAGAACTTGAAGAAGCCACGAACCATTTCGACTCCAACAAAGAGCTCGGCGATGGAGGCTTTGGCACAGTGCATTATGGCTTACTCAAAGACGGGCGTGCCGTCGCTGTCAAACGGTTGTTCGAAAGCAATTTCAAGAGAGTTGAGCAGTTCATGAATGAGGTCGGGATCCTCGCACGCTTACGCCACCACAACCTCGTTTCACTTTACGGTTGTACCTCGAGCAACAGCCGCGAGCTTCTGCTCGTGTATGAATACGTTCCGAACGGTACGGTGGCTGATCACCTCCATGGAAAACTAGCAAAGCTAAGCAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTCCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATCCTCCTCGACAACCACTACTCCGTTAAAGTAGCCGATTTCGGGTTATCCCGCCTCTTCCCACTCGACGTCACGCACGTTTCAACCGCTCCACAAGGTACTCCCGGCTACGTCGACCCGGAGTACCATCAGTGCTACCAACTCTCTGATAAAAGCGATGTCTTCAGCTTCGGCGTAGTACTTGTTGAACTCATGTCCTCAATGCCTGCTGTTGACATCACAAGACATAGACAAGAGATCAACCTGTTCAACATGGCCATCAACAAGATCCAAAGCCACGCATTACACGAACTCGTCGACCCATCGCTCGGTTTCGAATCAGACGACAAAATCAAAGACATGATAACGAGCGTCGCCGAGGTTGCATTTCAATGCCTGCAGAGCATGAAAGACGAGAGGCCAACAATGATGGAAGTTCTTGACAGTCTAAACGCCATACAGAATCGAAACGGTGATGCTGTGCAGGTAAAGAATGGCTATGAATCTTCACCAAGTTCCATGTCAGTGTCTTGGGTTAGTAGTAACACCTCTACAGCAACAAATTATTGA 1347 49.67 METFLLRIHFRNAAVLVTFATAFLLRFRPSLADDNDDCKIGTCPFLLPPPPDNSDDIKKKIIIGTCTGFGALLLTLLVLGICYRWRQLRRKRSHMLPYVQRSVLSNPPSVEEAENGGTYLGVHLFSYKELEEATNHFDSNKELGDGGFGTVHYGLLKDGRAVAVKRLFESNFKRVEQFMNEVGILARLRHHNLVSLYGCTSSNSRELLLVYEYVPNGTVADHLHGKLAKLSKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNHYSVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELMSSMPAVDITRHRQEINLFNMAINKIQSHALHELVDPSLGFESDDKIKDMITSVAEVAFQCLQSMKDERPTMMEVLDSLNAIQNRNGDAVQVKNGYESSPSSMSVSWVSSNTSTATNY 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1483079 1486094 - CmoCh10G003290.1 Cmo10g00329 389675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00329 448 Gene3D Transferase(Phosphotransferase) domain 1 214 431 - -
Cmo10g00329 448 SMART serkin_6 137 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00329 448 ProSiteProfiles Protein kinase domain profile. 137 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00329 448 SUPERFAMILY Protein kinase-like (PK-like) 119 408 IPR011009 -
Cmo10g00329 448 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 55 421 - -
Cmo10g00329 448 Pfam Protein kinase domain 138 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00329 448 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Cmo10g00329 448 MobiDBLite consensus disorder prediction 422 448 - -
Cmo10g00329 448 Gene3D Phosphorylase Kinase; domain 1 110 213 - -
Cmo10g00329 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Cmo10g00329 448 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 55 421 IPR044652 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00329 Cmo13g01055 CCT
Cmo10g00329 Cmo13g01055 ECH
Cmo10g00329 Cmo11g00288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00329 Cmo-Chr10:1483079 Cmo14g01200 Cmo-Chr14:10170525 2.72E-161 dispersed
Cmo11g00289 Cmo-Chr11:1410938 Cmo10g00329 Cmo-Chr10:1483079 4.69E-07 transposed
Cmo01g00425 Cmo-Chr1:2081165 Cmo10g00329 Cmo-Chr10:1483079 1.88E-143 wgd
Cmo10g00329 Cmo-Chr10:1483079 Cmo11g00288 Cmo-Chr11:1407876 0 wgd
Cmo10g00329 Cmo-Chr10:1483079 Cmo13g01052 Cmo-Chr13:8782180 7.26E-166 wgd
Cmo10g00329 Cmo-Chr10:1483079 Cmo18g01013 Cmo-Chr18:10980597 6.87E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74600 PF00069 Pkinase 6.50E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00329 - - csv:101210087 664.84