Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00339 ATGGCGAAAGATTCCAGCTCGTCCTTGAACTCGCCTCTTCTTCACATTTCTGAAGATGGGTTGAATTCAAATGATAAGAACAATAGAAGGAAACAACAAGTAGCTGAGGAAGTAAAGAAGCAGCTATGGCTAGCAGGGCCTTTGATTTTGGTCAGTCTTTTACAATATTGTTTGCAGATGATTTCCGTCATGTTTGTGGGTCATCTTGGCGAGTTGCCTCTTTCTGGTGCTTCCATGGCGACTTCCTTTGCAACAGTGACTGGTTTCAGCTTATTGATGGGGATGGCTAGTGCTTTAGATACATTTTGTGGCCAATCTAATGGAGCTAAGCAATATCATATGCTGGGTATTCATATGCAGCGAGCAATGTTTGTTCTTTTGATTGTGAGTATACCTCTTGCTGTTGTTTGGGCTAACACAGGAGAGATTCTGAAAGCACTTGGCCAAGATGCTGAGATTTCAAGAGAAGCTGGGACGTATGCTATTTCAATGATCCCAAGCCTTTTTGCATATGGTTTACTGCAATGTTTGAACAGATTCTTACAGACCCAGAACGTTGTTTTTCCTATGGTGATGTGTTCTGGAATAGCAGCTTTGCTTCACATACCCATTTGTTGGATCTTGATATTCAAAGTTGGGCTTGAAATTCGAGGAGCTGCTATTGCTAACTCCATCTCTTATTGGCTTAATGTGTTGATGTTGATAGTTTATGTTAAGTTTTCTTCTTCATGTTCGAAGTCTTGGACGGGGTTTTCAGTGCAGGCTTTTCATAACATCCCTTACTTCCTTAAGCTTGCAATTCCTTCAGCTTGCATGGTTTGCTTGGAAATGTGGTCGTTTGAGTTGATCGTTCTTTTGTCTGGGCTTCTACCAAATCCTAAACTAGAGACATCAGTGCTTTCTATCAGTCTTAATACAGCTGCAACAGTTTGGATGATCCCATTTGGTATGAGTGGCGCAGGAAGCACCCGAGTCTCAAATGAACTAGGAGCTGGCCATGCAGGAGCAGCCAAGCTAGCTGGATGTGTAGTAGTGACAATGGCCACCATTGAGGGGCTACTGCTTGGAACTACCTTGATTCTTATACGTAATGTTTGGGGGTATGCTTATAGCAACGAACCAGAAGTGATTGAATACGTAGCCAGCATGCTTCCTATAGTTGCAGTGTCCAGCTTCCTCGATGGACTTCAATGCGTGCTTTCAGGCATTGCTAGAGGTTGTGGTTGGCAGAAGATTGGTGCCTTTGTCAATCTTGGATCATATTATATTGTGGGAATCCCATCTGCAGTTTTTCTTGCTTTTCTTTTGCACATTGGTGGACGGGGGCTGTGGTTTGGCATCATTTTGGCACTCATTTTCCAAGCATTTTCTCTTGCTATCATTGCAATCCGCACAGATTGGGACCAAGAAGCAAAGATTGCTACAGAAAGAGTTTATGACTCAACAATTCCAGAGAATGTTGTGTCATGA 1470 42.79 MAKDSSSSLNSPLLHISEDGLNSNDKNNRRKQQVAEEVKKQLWLAGPLILVSLLQYCLQMISVMFVGHLGELPLSGASMATSFATVTGFSLLMGMASALDTFCGQSNGAKQYHMLGIHMQRAMFVLLIVSIPLAVVWANTGEILKALGQDAEISREAGTYAISMIPSLFAYGLLQCLNRFLQTQNVVFPMVMCSGIAALLHIPICWILIFKVGLEIRGAAIANSISYWLNVLMLIVYVKFSSSCSKSWTGFSVQAFHNIPYFLKLAIPSACMVCLEMWSFELIVLLSGLLPNPKLETSVLSISLNTAATVWMIPFGMSGAGSTRVSNELGAGHAGAAKLAGCVVVTMATIEGLLLGTTLILIRNVWGYAYSNEPEVIEYVASMLPIVAVSSFLDGLQCVLSGIARGCGWQKIGAFVNLGSYYIVGIPSAVFLAFLLHIGGRGLWFGIILALIFQAFSLAIIAIRTDWDQEAKIATERVYDSTIPENVVS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1527518 1532778 + CmoCh10G003390.1 Cmo10g00339 389685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00339 489 Pfam MatE 268 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo10g00339 489 Pfam MatE 47 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo10g00339 489 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 477 - -
Cmo10g00339 489 MobiDBLite consensus disorder prediction 1 21 - -
Cmo10g00339 489 TIGRFAM matE: MATE efflux family protein 47 444 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cmo10g00339 489 MobiDBLite consensus disorder prediction 1 32 - -
Cmo10g00339 489 PANTHER PROTEIN DETOXIFICATION 23 477 - -
Cmo10g00339 489 CDD MATE_eukaryotic 37 472 IPR045069 GO:0042910|GO:1990961
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00339 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - csv:101205241 828.935
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00339 Cmo11g00301 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00339 Cmo-Chr10:1527518 Cmo11g00302 Cmo-Chr11:1456477 0 dispersed
Cmo10g00339 Cmo-Chr10:1527518 Cmo10g00340 Cmo-Chr10:1535480 4.19E-134 tandem
Cmo10g00339 Cmo-Chr10:1527518 Cmo11g00301 Cmo-Chr11:1452068 0 wgd
Cmo10g00339 Cmo-Chr10:1527518 Cmo18g00994 Cmo-Chr18:10851394 1.45E-116 wgd
Cmo10g00339 Cmo-Chr10:1527518 Cmo04g01548 Cmo-Chr4:7915110 1.36E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g256 . . . . . . . . . . . Cma11g00296 . . . . Cpe04g01386 Bhi02g00113 . . . . . . . . . . . . . . . . . . . . . . Blo15g00062 . . . . . . . Cmo10g00339 Cmo11g00301 . . . . . . . . . . . . . . . . . . . . . Csa01g00418 Chy02g02328 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000257 4 6 1 5 3 6 0 7 6 5 4 6 6 6 5 5 6 3 3 7 7 4 2 7 6 4 3 8 8 10 153
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00339 Cmo_Chr10 FPKM 2.836667 2.809767 45.10128 41.674198 38.968681 32.588886 42.277412 46.140942 46.58157 46.678062