Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00342 ATGGGAAATGAAGGCAAAAAGAAGAGAAGTGTACGAAGAGCAAATCCAAAGGTCGAAGTTGAAGAGGTAAGGGATAAAAACCAACATTTATTAACCATTGGATCGATCAAATTGGTCACTCCTCTCGGAGTGCAGCTTCTCCGCCATCTTCAAGCGCCAAACCCTCGAATTTCGCAACCCCGAAGAGACTTAGGAATCTGTGTCGATTCAAAGCGGGGAAGACCTGCTTCCTTCTGCGCTTGTCGAGTCGCTTCCCATTTCGCCTCTTCCCTTTTGAAGTTGTGGGAATTTCGAGTTTTCGCGCCTTATCGTGGATTTGCGCGTTTCTCCATCTCTTTTCCTTCTAGGGATTTCTGGAAAAGGTATAAGAGGAAGATTTTAATTACAGCTGGAGTTTTAGGAAGCGGGTATTTTCTGTACCGACAATATGACTATTACAGTCGAAGGCTTCATGATATCCAGAAAGAGTTGGATAATGAACGTGAAGCAGATGAGCTCATTAAAGCTCAAATACAAGCTCATTTTGAGAACATTCAAAGAATAGCTGATACAACGACGTTGCCTCATGCTTTACAACATTTACATAATCGGATAGAGGAAGATTTGGATCTTTCACACCTGACAGAGAGATTAATGATGGGGAAGGGCGAGCGAAACACTTTGACATTAGCTGAGAAGCTTGATTTATGGGAAAACCTCAAAATACTAAGCTTCACAAAGATGGTGATATCACTCTGGGCAATAACTGTGTTAAGTTTGTACATTAGAGTTCAAGTCAACATCTTAGGAAGACATATGTACATCGATACTGCCCGTGGTCTTGGTAGCTCCCAGTTGCTTGAGGAGGCTGACCTCATCAATAGAGAAGACCAACAGAAATTTCTGGCCATCTCTGATTTTCTCTGTAATTATGGTCTGAATGCCTTGATTCCTAAATTGCAGCTCTGCTGTCGAGTAAACTGGCAGCATAGTTCTCCCAAAACATTGTTTGAGAATCTTTTACAGAGATTTCGTTTGATCGATCACAACTATGCCTTAAAACAGTTGCGAGATGTCTTTAATACAACCGTACTTCGTGACACTACTACACAAATAATTAAAATTTTCATGAGCACAGGAAGTCCCCATCATTGGTTGGACTACTTGATGCCTGGGGACAATCAATCTAATATTACAGACACGCTCTCCACTGACGACAATGCAGCTGCCCGAAATTTCAACAAGTTTGATCAGCTCATGATGGAGACTAGAGCAGTACTGCTAAGTGCCGAGTTCGGGAGCGTCGTTGAGAGATCGTTAGAAGTGGGAGTCGATGGGTTGATGGATGAAATGGAGGCTTCAGTTGCTGGAGGCAGCAGCAGAACATCAGGAATACCCCTGGCTAGGCTTGTGCCAAGAGTGGCCCAGATGGGGCTATTGCTCCTTGAAGATCCAATAAAAAGTAGATTCATCAAAACGATAAGAGGTATACCAGAAGTGGAAATCTTTTTTACTCTTCTTTATGCAAATATGCCTACCTCTTAG 1524 42.65 MGNEGKKKRSVRRANPKVEVEEVRDKNQHLLTIGSIKLVTPLGVQLLRHLQAPNPRISQPRRDLGICVDSKRGRPASFCACRVASHFASSLLKLWEFRVFAPYRGFARFSISFPSRDFWKRYKRKILITAGVLGSGYFLYRQYDYYSRRLHDIQKELDNEREADELIKAQIQAHFENIQRIADTTTLPHALQHLHNRIEEDLDLSHLTERLMMGKGERNTLTLAEKLDLWENLKILSFTKMVISLWAITVLSLYIRVQVNILGRHMYIDTARGLGSSQLLEEADLINREDQQKFLAISDFLCNYGLNALIPKLQLCCRVNWQHSSPKTLFENLLQRFRLIDHNYALKQLRDVFNTTVLRDTTTQIIKIFMSTGSPHHWLDYLMPGDNQSNITDTLSTDDNAAARNFNKFDQLMMETRAVLLSAEFGSVVERSLEVGVDGLMDEMEASVAGGSSRTSGIPLARLVPRVAQMGLLLLEDPIKSRFIKTIRGIPEVEIFFTLLYANMPTS 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1543517 1547682 - CmoCh10G003420.1 Cmo10g00342 389688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00342 507 PANTHER PEROXISOMAL BIOGENESIS FACTOR 3 347 507 IPR006966 GO:0005779|GO:0007031
Cmo10g00342 507 PANTHER PEROXISOMAL BIOGENESIS FACTOR 3 117 312 IPR006966 GO:0005779|GO:0007031
Cmo10g00342 507 Pfam Peroxin-3 118 219 IPR006966 GO:0005779|GO:0007031
Cmo10g00342 507 Pfam Peroxin-3 221 503 IPR006966 GO:0005779|GO:0007031
Cmo10g00342 507 PANTHER PEROXISOME BIOGENESIS PROTEIN 3-2-LIKE 347 507 - -
Cmo10g00342 507 PANTHER PEROXISOME BIOGENESIS PROTEIN 3-2-LIKE 117 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00342 K13336 PEX3; peroxin-3 - csv:101216945 658.677
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00342 Cmo11g00304 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00342 Cmo-Chr10:1543517 Cmo11g00304 Cmo-Chr11:1468586 1.07E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g243 Blo04g00841 . . . . Bpe13g00369 . . . . . Cma11g00301 . Car11g00275 . . . . . . . . . . Cla06g01434 Cam06g1589 Cec06g1649 Cco06g1641 Clacu06g1550 Cmu06g1505 Cre06g2314 . . . . . . . . . . . . . Bpe15g00521 . . . Cmo10g00342 Cmo11g00304 . . . . . . . . . . . . . . . . . . . . Lsi06g01301 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004939 2 1 2 2 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00342 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0