Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00344 ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAGGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTACGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTCTATCAATCCCCGGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGGAATATTCAGAACCGGTTCTCGACTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACACTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAGATGTTGCAAGATTGACATCCTCAGAAAGGTCATCCATGATAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGCAGACGAAAAACAACTTGTGCCCTGACTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAACAGCCTTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAATCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGACAACATTCTTGCATCAATAAAAGGCCTCGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTTCATGTATCTTCAGGGTCGTTCAGGCGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATTCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGAACTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTACCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGATGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGATGAAATCAAATAACCAGAGGAATCAAGCTGATGAAACGGCTCAGGTGGATTTTGCAAATAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCATATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGTGCAGAACAGAATTCGGACACTCGGAGCCTTGAGGTGCAGTTGAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCCTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAATGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCATTACCTCAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGATAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGGGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGATGAATGAGCTTCATCGTTGTAATCAATCGAAGAAGAGAAAGCATAGCGGTACGAATACAAGTCCATTAGGAACAATGGAAGCAGTTGAAGAGGTTGATGACTGCACTCTCCAGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGACAAGAAAGTGGATGGCAGTTCAAGCACTCCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGATAAATTGAAGAGAAAAAAGCATTAA 3000 43.43 MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDSINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSTAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVARLTSSERSSMIAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALTQMVDPRVQLISAGKPQAKDSSKKDKRLSAMCYGPAENSHVACYRTALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKGLDITPEKIREFLPKVNWDKLAFMYLQGRSGAECEARWLNFEDPLINRNSWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRMRRMPVSRNEKSANGDAPKKMKSNNQRNQADETAQVDFANNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRSLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTPPDTTLLASITADDIIETKGVNVADKDLDDSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHGVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGMNELHRCNQSKKRKHSGTNTSPLGTMEAVEEVDDCTLQGFLQKRLKRTTTTHDKKVDGSSSTPPEVDNDDNDPTLALLLKDKLKRKKH 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1551415 1561143 - CmoCh10G003440.1 Cmo10g00344 389690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00344 999 MobiDBLite consensus disorder prediction 867 902 - -
Cmo10g00344 999 Gene3D - 542 588 - -
Cmo10g00344 999 SMART sant 487 536 IPR001005 -
Cmo10g00344 999 SMART sant 539 587 IPR001005 -
Cmo10g00344 999 SMART sant 434 483 IPR001005 -
Cmo10g00344 999 SMART sant 381 431 IPR001005 -
Cmo10g00344 999 SMART sant 281 378 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 488 534 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 382 427 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 435 479 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 541 584 IPR001005 -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 664 695 - -
Cmo10g00344 999 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 912 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 917 937 - -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 535 585 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 487 534 IPR017930 -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Cmo10g00344 999 CDD SANT 542 585 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 589 IPR017930 -
Cmo10g00344 999 SUPERFAMILY Homeodomain-like 359 426 IPR009057 -
Cmo10g00344 999 SUPERFAMILY Homeodomain-like 485 581 IPR009057 -
Cmo10g00344 999 CDD SANT 437 481 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 485 IPR017930 -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 377 429 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 430 481 IPR001005 -
Cmo10g00344 999 CDD SANT 491 532 IPR001005 -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 958 999 - -
Cmo10g00344 999 Gene3D - 486 540 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 613 720 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 639 663 - -
Cmo10g00344 999 SUPERFAMILY Homeodomain-like 414 485 IPR009057 -
Cmo10g00344 999 Gene3D - 379 429 - -
Cmo10g00344 999 Gene3D - 433 485 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 14 28 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00344 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1471.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00344 Cmo11g00305 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00344 Cmo-Chr10:1551415 Cmo09g00544 Cmo-Chr9:2587560 4.16E-11 dispersed
Cmo10g00344 Cmo-Chr10:1551415 Cmo14g00140 Cmo-Chr14:615755 1.82E-13 transposed
Cmo10g00344 Cmo-Chr10:1551415 Cmo05g00628 Cmo-Chr5:3159771 7.00E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g01075 . 1 851 MYB-Related Transcription Factor Family AT1G09770 75.9 0.0e+00 1188.3
Cmo11g00994 . 1 728 MYB-Related Transcription Factor Family AT1G09770 81.9 0.0e+00 1144.0
Cmo10g00344 CST 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 6.9e-148 521.9
Cmo10g00344 CST 165 630 MYB-Related Transcription Factor Family AT3G18100 55.3 6.9e-148 521.9
Cmo10g01075 . 1 851 MYB-Related Transcription Factor Family AT1G09770 75.9 0.0e+00 1188.3
Cmo11g00994 . 1 728 MYB-Related Transcription Factor Family AT1G09770 81.9 0.0e+00 1144.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10448 PF00249 Myb_DNA-binding 9.70E-09 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00344 Cmo_Chr10 FPKM 1.923611 0.0 1.98778 4.244368 2.011298 1.648853 2.127895 5.529755 4.637446 5.07899