Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00344 ATGTCTCGCCGCAGCCATGTCGACGGCGGTGACAAGGAGCTTCCCGCCAGCGAGGAGGACGATGAAGATGATCTGGTTGATGATGACATGGAAACCCTACGAAGAGCGTGCAGGCTTGCTGGAGTTAATCATGAGGATTCTATCAATCCCCGGCTTTCGTTGCCTGCCGCCGGAGATGCTAATCTAGGTTCTGATTCTGATGATGTTGATGATCTCGAACTTCTTCGGAATATTCAGAACCGGTTCTCGACTGCGGCCGATGAGCAGCCGCTGAGTATTCTCCCACCGGTGACCGCGGACGAGGAGGAAGATGATTTCGAGACACTACGTTCGATTCAGCGGCGCTTTGCGGCGTATGAAAGTGATATTTTGAGCAATAAACCTGATCAATCTTGTGACTTGGATGGGCCTCTAAAGATGGATTCTGACAACACAGATGTTGCAAGATTGACATCCTCAGAAAGGTCATCCATGATAGCCTTTGAAAAGGGAAGCTTGCCAAAGGCTGCTTTGGCATTTATTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGTAGTAAGATGATTCACCTTGAGGCTAGAATTGAGGAGAACAAAAAACTCAGAAAACGTTTCAAAGTTCTCAAAGGTTTCCAGGGTTCATGCAGACGAAAAACAACTTGTGCCCTGACTCAGATGGTAGATCCTCGAGTCCAGTTAATATCAGCTGGAAAACCACAGGCAAAGGATTCATCAAAGAAGGACAAACGATTATCTGCAATGTGTTATGGCCCAGCTGAGAATTCTCATGTTGCTTGCTACAGAACAGCCTTGACAAAGTTTCATCCTGTAGATCGAAAAAGATGGTCCAATTTTGAAAGGGAGAATCTAGGCAAGGGAATAAGACAGCAATTCCAGGAGATGGTGCTTCAGATTTCAGTGGATCAAATTAGTGAGATACAAGGATTTTCAGCAGAATCAGATGATCTGGACAACATTCTTGCATCAATAAAAGGCCTCGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTTCATGTATCTTCAGGGTCGTTCAGGCGCAGAATGTGAAGCGAGGTGGTTGAATTTTGAAGATCCCCTAATTAACCGGAATTCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAAGGATTGAATAACTGGATTGAACTGGCAGTTTCGTTGGGAACAAACAGAACTCCTTTTCAGTGCTTGTCTCGGTACCAAAGGAGTTTAAACGCTTCCATATTAAAGAGTGAGTGGACTAAAGATGAGGATGATAAACTTCGATCTGCTGTTGCTATATTTGGTGAGGGAGATTGGCAGGCCGTAGCTTCTACTTTGGAAGGGCGAACTGGTCCACAGTGCTCTAATAGGTGGAAAAAATCCCTTGATCCAGCTAGGACAAAAAGAGGCTATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGCCGAAATCAAGTTCAATGCAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGATGTGAATGGACAGAAGAGGAGGATTTAAGGCTAGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGCGTGCCATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGAAGTTATTTCCCAATCAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAGAAGGTTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAGCGGCCTGCTCTTGGTCCTACTGACTTTCGACCTGTACCAAATTCACATTTATTATGTAATACTGATGATCCAGAAACTGCCCCAAAAAGAAATGTGAGGATGAGAAGGATGCCAGTGTCAAGGAATGAAAAGAGTGCTAATGGTGATGCTCCAAAGAAGATGAAATCAAATAACCAGAGGAATCAAGCTGATGAAACGGCTCAGGTGGATTTTGCAAATAATACATCTTCTGTCCCAGAGGTTAAATCTACAAAACCTCAAAGAAAACGAACTAGACATGGAGCATATACCACTAGGAGGAAAGGGGCTCCGAAGATAGGTTGTAATAGTGAGAGATGTGCAGAACAGAATTCGGACACTCGGAGCCTTGAGGTGCAGTTGAATTGCAAGGAACCAGCAGAGAGGATCAACAGTGACTGCCCTGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGCTGCAGAGATGCATTCTGAAGGAGTTGTATGCTTTTCAGAACAAGAAGAAAATCAAAACTCTACCGGATCTTCTGGAGTGTCCGTACTGTCAGAAATGACTAATGACATGGACGAATATAACCCTTCTACTCCTCCTGATACAACGTTGCTGGCTAGTATTACTGCGGATGATATTATAGAAACGAAGGGCGTGAATGTTGCAGACAAAGATCTGGATGACAGTAACAGTTTCTCATTACCTCAAAGTTGCTTAGAACTCAGGACAACTGACAGTGAAGGTGTTGATAGCTATTCTGTGGATGAATTCACAGATAAAAGCCATGGGGTTTGCAAGCCCCAAGGCAGAAGGAAGAAAAATAGCAAAAGATCAAATAAGAGCCAGGACTCGTTGGTTTCTTGTCAACAAGCAGAGCTGGAGATGTCTGGGATGAATGAGCTTCATCGTTGTAATCAATCGAAGAAGAGAAAGCATAGCGGTACGAATACAAGTCCATTAGGAACAATGGAAGCAGTTGAAGAGGTTGATGACTGCACTCTCCAGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACAACCACACATGACAAGAAAGTGGATGGCAGTTCAAGCACTCCCCCTGAAGTTGATAATGACGACAATGATCCAACCCTTGCCTTGCTTCTCAAGGATAAATTGAAGAGAAAAAAGCATTAA 3000 43.43 MSRRSHVDGGDKELPASEEDDEDDLVDDDMETLRRACRLAGVNHEDSINPRLSLPAAGDANLGSDSDDVDDLELLRNIQNRFSTAADEQPLSILPPVTADEEEDDFETLRSIQRRFAAYESDILSNKPDQSCDLDGPLKMDSDNTDVARLTSSERSSMIAFEKGSLPKAALAFIDAIKKNRSQQKFIRSKMIHLEARIEENKKLRKRFKVLKGFQGSCRRKTTCALTQMVDPRVQLISAGKPQAKDSSKKDKRLSAMCYGPAENSHVACYRTALTKFHPVDRKRWSNFERENLGKGIRQQFQEMVLQISVDQISEIQGFSAESDDLDNILASIKGLDITPEKIREFLPKVNWDKLAFMYLQGRSGAECEARWLNFEDPLINRNSWTTSEDKNLLFTIQQKGLNNWIELAVSLGTNRTPFQCLSRYQRSLNASILKSEWTKDEDDKLRSAVAIFGEGDWQAVASTLEGRTGPQCSNRWKKSLDPARTKRGYFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNECRRRWKKLFPNQVPLLQEARKIQKVALISNFVDRESERPALGPTDFRPVPNSHLLCNTDDPETAPKRNVRMRRMPVSRNEKSANGDAPKKMKSNNQRNQADETAQVDFANNTSSVPEVKSTKPQRKRTRHGAYTTRRKGAPKIGCNSERCAEQNSDTRSLEVQLNCKEPAERINSDCPETVDENGMEVFENKAAEMHSEGVVCFSEQEENQNSTGSSGVSVLSEMTNDMDEYNPSTPPDTTLLASITADDIIETKGVNVADKDLDDSNSFSLPQSCLELRTTDSEGVDSYSVDEFTDKSHGVCKPQGRRKKNSKRSNKSQDSLVSCQQAELEMSGMNELHRCNQSKKRKHSGTNTSPLGTMEAVEEVDDCTLQGFLQKRLKRTTTTHDKKVDGSSSTPPEVDNDDNDPTLALLLKDKLKRKKH 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1551415 1561143 - CmoCh10G003440.1 Cmo10g00344 389690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00344 999 MobiDBLite consensus disorder prediction 867 902 - -
Cmo10g00344 999 Gene3D - 542 588 - -
Cmo10g00344 999 SMART sant 487 536 IPR001005 -
Cmo10g00344 999 SMART sant 539 587 IPR001005 -
Cmo10g00344 999 SMART sant 434 483 IPR001005 -
Cmo10g00344 999 SMART sant 381 431 IPR001005 -
Cmo10g00344 999 SMART sant 281 378 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 488 534 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 382 427 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 435 479 IPR001005 -
Cmo10g00344 999 Pfam Myb-like DNA-binding domain 541 584 IPR001005 -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 664 695 - -
Cmo10g00344 999 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 912 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 917 937 - -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 535 585 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 487 534 IPR017930 -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Cmo10g00344 999 CDD SANT 542 585 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 589 IPR017930 -
Cmo10g00344 999 SUPERFAMILY Homeodomain-like 359 426 IPR009057 -
Cmo10g00344 999 SUPERFAMILY Homeodomain-like 485 581 IPR009057 -
Cmo10g00344 999 CDD SANT 437 481 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 485 IPR017930 -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 377 429 IPR001005 -
Cmo10g00344 999 ProSiteProfiles Myb-like domain profile. 430 481 IPR001005 -
Cmo10g00344 999 CDD SANT 491 532 IPR001005 -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 958 999 - -
Cmo10g00344 999 Gene3D - 486 540 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 613 720 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 639 663 - -
Cmo10g00344 999 SUPERFAMILY Homeodomain-like 414 485 IPR009057 -
Cmo10g00344 999 Gene3D - 379 429 - -
Cmo10g00344 999 Gene3D - 433 485 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 14 28 - -
Cmo10g00344 999 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00344 Cmo11g00305 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00344 Cmo-Chr10:1551415 Cmo09g00544 Cmo-Chr9:2587560 4.16E-11 dispersed
Cmo10g00344 Cmo-Chr10:1551415 Cmo14g00140 Cmo-Chr14:615755 1.82E-13 transposed
Cmo10g00344 Cmo-Chr10:1551415 Cmo05g00628 Cmo-Chr5:3159771 7.00E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10448 PF00249 Myb_DNA-binding 9.70E-09 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00344 K09422 - csv:101216287 1471.06