Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00349 | ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTCCAACGTCGCACTTCGTCTTCTTCTTCTTCTTCTTCTGATCCTACTTCTGATTCTAATCTCGGTTATCCTTATCTTGATAAGCTCGATCATGTTGTTAATGGTGACCAATTGGTGAGTAGCGATTTGCGCGCCCAATCGACTATTGCTCCCAAACGGAAACAAACCCAACTTGGAGGAGAAGGGATTCTTGAGCGATTACCTGAGGAGGAGCACGACTACGACGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACTTCAGAGCTCCGCTTCCTCCTCCTCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGCCAGCCGATATCAGGTTCAAGAAATAATCGGTAAAGGAAGCTATGGGGTAGTCGGTTCGGCCATTGATACTCATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGACGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTGCGGTTGCTCCGTCATCCTGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCCAACGATGATCTCTCTCCTGAGCACCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCTGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTTTCGTTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCGAAATACACTCCTGCAATTGATATGTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGGAAGCCACTGTTCCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGGTTGATGTGCTTGGCACGCCTTCTGCCGAGTCCATTGCCAAGATTCGAAATGAAAAGGCAAGAAGATACATTAGTAATATGAGGAGAAAGCAGCCTGTTTCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTTCGCTTGCTTAAACGTCTCCTTGCATTTGATCCCAAAGACCGTCCCACAGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCCAACGTGGATCGCGAACCATCAACACAACCAATTTCAAAACTCGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGAGGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAAATGCTACAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGCGGTGTCGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGAAAGGGCGAAAGAAGTACTCCGCTTCAAAGAAAGCATGCTTCATTGCCCAGAGAAAGGGTTTGTGCACCAAAAGACGAGGTCGAACAACACAATGATTTAGAAGGAAGAAATGGTGCACATGTTGCTACATCTCTTCAGAGTCCCCCAAGGTCGACAGCGGATAGTTCGGAAAATGCAAACAGTTACGAACAAAATGGACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGTTGTTAAACCAAGAAACGACCTAGAGGAGGAACCGATTACAGAGACGAACGACGAGGCAGTTGATGGATTGTCTCAAAAGCGTGGCACAAAGCGACGACGGGGCTGCTCGTTTTGCATATATTTTCCGAAAAGGACATGTTGGCTACAAGGCAGAGTGTGTAGCAAAGTCTCCCAAGTCAGCTTCACGCAAATGACTGGCGGCGATCAAGACCACGAGCCTGAAAAATGTGGCAACGCCACCAATCACCAACAAAGACCTGCCTCCTTTGATCCCTCTTCTCTTGTCTCTCCCAAGGCTGTGCCGCCCATCTCGGCGGCGCCGGACACCGATCATGCTCTCCGCCGCCCGCGGGGCCGCCCTGCCGGGTCCAAAAATAAGCCTAAACCCCCAATTATTGTTACTCGAGATAGCGCCAATGCGCTTCGAGCCCATGCGATTGAGGTTAGTTCTGGGTGCGATGTCAATGAGAGCCTCTCGAACTTTGCTCGAAGGAAGCAGCGTGGCTTCTGCATTCTTAGTGGGAGTGGGTGCGTCACTAATGTCACGCTCCGCCAAGCTGCCTCCTCTGGCGCCATTGTTACTCTTCATGGACGTTTCGAGATCCTTTCAATGTTGGGGTCGATTCTTCCACCACCAGCGCCGTCCGGGATCACTGGACTGACGATTTACTTGGCCGGCGCACAAGGGCAGGTGGTCGGTGGAGTTGTGGTGGGTGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACGTTCATGAACGCAACATTTGACCGCCTGCCGTCGGACGACGAAGAAGTGGCAAGCGCTATACAGAGCCAACACTACGGCCAACATGGACGGAGCCACCACCACGTGGATGTGTCGGATCTGTATGGCGTGCCGCAGAATTTGATCACCAACAGCGCACTTCCGCCGGAATTGTACTCTTGGGCGGCGGCGGGCAGAACCATGTCAAAGACTTGA | 2787 | 47.9 | MGSGTLVDGVRRWFQRRTSSSSSSSSDPTSDSNLGYPYLDKLDHVVNGDQLVSSDLRAQSTIAPKRKQTQLGGEGILERLPEEEHDYDDDLDYSALKLIKVPKRTNHFRAPLPPPPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLSPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDMWSIGCIFAEMLTGKPLFPGKNVVHQLDLMVDVLGTPSAESIAKIRNEKARRYISNMRRKQPVSLTQKFPNADPLALRLLKRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKEDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRKHASLPRERVCAPKDEVEQHNDLEGRNGAHVATSLQSPPRSTADSSENANSYEQNGPNKANYSARSLLKSASISASKCIVVKPRNDLEEEPITETNDEAVDGLSQKRGTKRRRGCSFCIYFPKRTCWLQGRVCSKVSQVSFTQMTGGDQDHEPEKCGNATNHQQRPASFDPSSLVSPKAVPPISAAPDTDHALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGFCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVASAIQSQHYGQHGRSHHHVDVSDLYGVPQNLITNSALPPELYSWAAAGRTMSKT | 928 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1579520 | 1586723 | - | CmoCh10G003490.1 | Cmo10g00349 | 389695 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00349 | 928 | CDD | DUF296 | 748 | 830 | IPR005175 | - | |
Cmo10g00349 | 928 | Gene3D | Phosphorylase Kinase; domain 1 | 160 | 481 | - | - | |
Cmo10g00349 | 928 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cmo10g00349 | 928 | CDD | STKc_TDY_MAPK | 143 | 480 | - | - | |
Cmo10g00349 | 928 | ProSiteProfiles | Protein kinase domain profile. | 144 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo10g00349 | 928 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 748 | 860 | IPR005175 | - | |
Cmo10g00349 | 928 | Pfam | Protein kinase domain | 144 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo10g00349 | 928 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 9 | 104 | 564 | - | - | |
Cmo10g00349 | 928 | MobiDBLite | consensus disorder prediction | 556 | 586 | - | - | |
Cmo10g00349 | 928 | MobiDBLite | consensus disorder prediction | 14 | 33 | - | - | |
Cmo10g00349 | 928 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 744 | 875 | - | - | |
Cmo10g00349 | 928 | Gene3D | Transferase(Phosphotransferase) domain 1 | 230 | 458 | - | - | |
Cmo10g00349 | 928 | SMART | serkin_6 | 144 | 435 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo10g00349 | 928 | ProSiteProfiles | PPC domain profile profile. | 744 | 881 | IPR005175 | - | |
Cmo10g00349 | 928 | SUPERFAMILY | Protein kinase-like (PK-like) | 140 | 440 | IPR011009 | - | |
Cmo10g00349 | 928 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 104 | 564 | - | - | |
Cmo10g00349 | 928 | MobiDBLite | consensus disorder prediction | 670 | 737 | - | - | |
Cmo10g00349 | 928 | Gene3D | - | 747 | 883 | - | - | |
Cmo10g00349 | 928 | MobiDBLite | consensus disorder prediction | 514 | 551 | - | - | |
Cmo10g00349 | 928 | ProSitePatterns | Protein kinases ATP-binding region signature. | 150 | 174 | IPR017441 | GO:0005524 | |
Cmo10g00349 | 928 | ProSitePatterns | MAP kinase signature. | 179 | 282 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cmo10g00349 | 928 | MobiDBLite | consensus disorder prediction | 514 | 586 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00349 | Cmo13g01034 | CCT | |
Cmo10g00349 | Cmo18g00049 | CCT | |
Cmo10g00349 | Cmo13g01034 | ECH | |
Cmo10g00349 | Cmo18g00049 | ECH | |
Cmo10g00349 | Cmo11g00311 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00349 | Cmo-Chr10:1579520 | Cmo11g00311 | Cmo-Chr11:1499676 | 0 | dispersed | |
Cmo11g00307 | Cmo-Chr11:1487679 | Cmo10g00349 | Cmo-Chr10:1579520 | 6.89E-120 | dispersed | |
Cmo10g00349 | Cmo-Chr10:1579520 | Cmo13g01034 | Cmo-Chr13:8708506 | 0 | wgd | |
Cmo10g00349 | Cmo-Chr10:1579520 | Cmo18g00049 | Cmo-Chr18:316757 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74602 | PF00069 | Pkinase | 1.20E-68 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00349 | - | - | cpep:111793155 | 1082.01 |