Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00349 ATGGGGAGTGGAACTCTCGTGGACGGTGTTCGTCGCTGGTTCCAACGTCGCACTTCGTCTTCTTCTTCTTCTTCTTCTGATCCTACTTCTGATTCTAATCTCGGTTATCCTTATCTTGATAAGCTCGATCATGTTGTTAATGGTGACCAATTGGTGAGTAGCGATTTGCGCGCCCAATCGACTATTGCTCCCAAACGGAAACAAACCCAACTTGGAGGAGAAGGGATTCTTGAGCGATTACCTGAGGAGGAGCACGACTACGACGACGACCTTGATTACTCTGCCTTGAAGCTCATCAAAGTTCCTAAGCGGACCAATCACTTCAGAGCTCCGCTTCCTCCTCCTCCTCCTCCTCCTGCTTTAATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAGTTTTTCACAGAGTATGGAGAGGCCAGCCGATATCAGGTTCAAGAAATAATCGGTAAAGGAAGCTATGGGGTAGTCGGTTCGGCCATTGATACTCATACTGATGAGAAGGTCGCAATTAAGAAAATTAATGACGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTGCGGTTGCTCCGTCATCCTGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCACGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGATCTTCACCAAGTAATTAAGGCCAACGATGATCTCTCTCCTGAGCACCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCTGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTTTCGTTTAATGATGCTCCATCTGCTATTTTCTGGACTGACTATGTTGCAACTCGGTGGTATCGTGCTCCTGAACTTTGTGGTTCTTTTTTCTCGAAATACACTCCTGCAATTGATATGTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGGAAGCCACTGTTCCCTGGGAAAAATGTGGTGCACCAACTGGATCTGATGGTTGATGTGCTTGGCACGCCTTCTGCCGAGTCCATTGCCAAGATTCGAAATGAAAAGGCAAGAAGATACATTAGTAATATGAGGAGAAAGCAGCCTGTTTCTCTCACACAAAAGTTCCCCAATGCCGATCCCTTGGCTCTTCGCTTGCTTAAACGTCTCCTTGCATTTGATCCCAAAGACCGTCCCACAGCTGAAGAGGCATTAGCTGATCCGTATTTTCATGGTTTGGCCAACGTGGATCGCGAACCATCAACACAACCAATTTCAAAACTCGAGTTTGAATTTGAGAGAAGAAAGTTGACAAAAGAGGATGTTAGAGAATTAATTTATCGAGAGATCTTGGAGTATCATCCTCAAATGCTACAGGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGCGGTGTCGATCGCTTCAAACGCCAGTTTGCACATCTAGAGGAACATTATGGAAAGGGCGAAAGAAGTACTCCGCTTCAAAGAAAGCATGCTTCATTGCCCAGAGAAAGGGTTTGTGCACCAAAAGACGAGGTCGAACAACACAATGATTTAGAAGGAAGAAATGGTGCACATGTTGCTACATCTCTTCAGAGTCCCCCAAGGTCGACAGCGGATAGTTCGGAAAATGCAAACAGTTACGAACAAAATGGACCAAACAAGGCAAATTACAGTGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCTAAATGTATAGTTGTTAAACCAAGAAACGACCTAGAGGAGGAACCGATTACAGAGACGAACGACGAGGCAGTTGATGGATTGTCTCAAAAGCGTGGCACAAAGCGACGACGGGGCTGCTCGTTTTGCATATATTTTCCGAAAAGGACATGTTGGCTACAAGGCAGAGTGTGTAGCAAAGTCTCCCAAGTCAGCTTCACGCAAATGACTGGCGGCGATCAAGACCACGAGCCTGAAAAATGTGGCAACGCCACCAATCACCAACAAAGACCTGCCTCCTTTGATCCCTCTTCTCTTGTCTCTCCCAAGGCTGTGCCGCCCATCTCGGCGGCGCCGGACACCGATCATGCTCTCCGCCGCCCGCGGGGCCGCCCTGCCGGGTCCAAAAATAAGCCTAAACCCCCAATTATTGTTACTCGAGATAGCGCCAATGCGCTTCGAGCCCATGCGATTGAGGTTAGTTCTGGGTGCGATGTCAATGAGAGCCTCTCGAACTTTGCTCGAAGGAAGCAGCGTGGCTTCTGCATTCTTAGTGGGAGTGGGTGCGTCACTAATGTCACGCTCCGCCAAGCTGCCTCCTCTGGCGCCATTGTTACTCTTCATGGACGTTTCGAGATCCTTTCAATGTTGGGGTCGATTCTTCCACCACCAGCGCCGTCCGGGATCACTGGACTGACGATTTACTTGGCCGGCGCACAAGGGCAGGTGGTCGGTGGAGTTGTGGTGGGTGCGCTCATTGCTTCCGGTCCAGTCGTGATCATGGCGGCGACGTTCATGAACGCAACATTTGACCGCCTGCCGTCGGACGACGAAGAAGTGGCAAGCGCTATACAGAGCCAACACTACGGCCAACATGGACGGAGCCACCACCACGTGGATGTGTCGGATCTGTATGGCGTGCCGCAGAATTTGATCACCAACAGCGCACTTCCGCCGGAATTGTACTCTTGGGCGGCGGCGGGCAGAACCATGTCAAAGACTTGA 2787 47.9 MGSGTLVDGVRRWFQRRTSSSSSSSSDPTSDSNLGYPYLDKLDHVVNGDQLVSSDLRAQSTIAPKRKQTQLGGEGILERLPEEEHDYDDDLDYSALKLIKVPKRTNHFRAPLPPPPPPPALMDSHKKGGLETEFFTEYGEASRYQVQEIIGKGSYGVVGSAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLSPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDMWSIGCIFAEMLTGKPLFPGKNVVHQLDLMVDVLGTPSAESIAKIRNEKARRYISNMRRKQPVSLTQKFPNADPLALRLLKRLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKEDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRKHASLPRERVCAPKDEVEQHNDLEGRNGAHVATSLQSPPRSTADSSENANSYEQNGPNKANYSARSLLKSASISASKCIVVKPRNDLEEEPITETNDEAVDGLSQKRGTKRRRGCSFCIYFPKRTCWLQGRVCSKVSQVSFTQMTGGDQDHEPEKCGNATNHQQRPASFDPSSLVSPKAVPPISAAPDTDHALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGFCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVASAIQSQHYGQHGRSHHHVDVSDLYGVPQNLITNSALPPELYSWAAAGRTMSKT 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1579520 1586723 - CmoCh10G003490.1 Cmo10g00349 389695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00349 928 CDD DUF296 748 830 IPR005175 -
Cmo10g00349 928 Gene3D Phosphorylase Kinase; domain 1 160 481 - -
Cmo10g00349 928 MobiDBLite consensus disorder prediction 1 37 - -
Cmo10g00349 928 CDD STKc_TDY_MAPK 143 480 - -
Cmo10g00349 928 ProSiteProfiles Protein kinase domain profile. 144 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00349 928 Pfam Plants and Prokaryotes Conserved (PCC) domain 748 860 IPR005175 -
Cmo10g00349 928 Pfam Protein kinase domain 144 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00349 928 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 104 564 - -
Cmo10g00349 928 MobiDBLite consensus disorder prediction 556 586 - -
Cmo10g00349 928 MobiDBLite consensus disorder prediction 14 33 - -
Cmo10g00349 928 SUPERFAMILY AF0104/ALDC/Ptd012-like 744 875 - -
Cmo10g00349 928 Gene3D Transferase(Phosphotransferase) domain 1 230 458 - -
Cmo10g00349 928 SMART serkin_6 144 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo10g00349 928 ProSiteProfiles PPC domain profile profile. 744 881 IPR005175 -
Cmo10g00349 928 SUPERFAMILY Protein kinase-like (PK-like) 140 440 IPR011009 -
Cmo10g00349 928 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 104 564 - -
Cmo10g00349 928 MobiDBLite consensus disorder prediction 670 737 - -
Cmo10g00349 928 Gene3D - 747 883 - -
Cmo10g00349 928 MobiDBLite consensus disorder prediction 514 551 - -
Cmo10g00349 928 ProSitePatterns Protein kinases ATP-binding region signature. 150 174 IPR017441 GO:0005524
Cmo10g00349 928 ProSitePatterns MAP kinase signature. 179 282 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo10g00349 928 MobiDBLite consensus disorder prediction 514 586 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00349 Cmo13g01034 CCT
Cmo10g00349 Cmo18g00049 CCT
Cmo10g00349 Cmo13g01034 ECH
Cmo10g00349 Cmo18g00049 ECH
Cmo10g00349 Cmo11g00311 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00349 Cmo-Chr10:1579520 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo11g00307 Cmo-Chr11:1487679 Cmo10g00349 Cmo-Chr10:1579520 6.89E-120 dispersed
Cmo10g00349 Cmo-Chr10:1579520 Cmo13g01034 Cmo-Chr13:8708506 0 wgd
Cmo10g00349 Cmo-Chr10:1579520 Cmo18g00049 Cmo-Chr18:316757 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74602 PF00069 Pkinase 1.20E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00349 - - cpep:111793155 1082.01