Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00358 ATGGCAAAAACCCTTTTCGTTTCCGTCTGGAATCCACGAAGCACAGTGATGTCTGCTCCGAAGTTCATGTATTTCGGCACTGCAATCTCCCGAACTACATCCAGAGCTCTATCGCCACTCCTCTTCCCGAGAAGACTCCCGCCGAAGCTCATATCTTTGATCAAGTGCAGTTCTTCTACAGGGCTTGATTCCGCCAGCAGTGGCGGCGCTGATGCTTCTCAATCCTACTCCGGCCTCACTCACCACCCCTGGCCTGAATGGGTTTCCTTCGTCGACGGTCTGAGGACCAAGGGTTACTTGGTCGAACCTAATGTAGAAGATGCGAACGGAGATGGGAGCGGCGGTGATGTAGCTACGACATCTGTGAATGATTACAACGACATGAATGTGTTGAAGGATGCTTGTCTTAACTTTGCGCGCGAACGCTACGATATTTTCAAGTCATTGTCCACAGATGATATTCAAACCCTTGTGAAGGATGGATGTCCCAATCTCTTCCGGAAAGTTGTTAATTCAGCTAAGAGATTGAGGGCTTACGTGCAACTAGACGAAGGGGACGTTTGTAGTACTTGCAATCTTCGAGGCTCCTGTGGTCGAGCTTATGTTATTTTAAAGGAAACAGAAGCAACTGCAAGAACTGTGGATGTAGCTCGATTATTGTTGACCTATGCATTGGAGCCAGTTGTTTTGTCTGGAGGGGACAAACCTCCCGGTAGAGAGCGTGTCGAAGTCTCTGCGAGAAAATTGCTTTCTGAGCTATTGAAACTGAGTGAAAAACCCATCGATGCATCAGCCGTGAAGCCCAATACGAAATCTACCCGAAGAAAAGAAAAACCATCAAAATTTACAGATGATGCTTTATCTCAAAATGTTGAGATGAAGAGAGGAGATTGGATGTGTACAAAATGCAACTTCTTGAATTTTTCGAGAAACAGAAAATGTTTGAAATGTAACGAAGATGGTCCTAAAAGAGTTCGTGCAGATGATATTGAAATGAAAAGTGGAGATTGGATCTGTTCAGAGTGCAACTTTATGAACTTCTCAAGAAACGTCAACTGCTTAAAGTGCAAAACCGAGAGGCCGAAGAAGATTGATGTCGGCGAAATTGAAATGAAGAAGGGAGATTGGGTCTGTCCGAAATGTACATTCATGAACTTTGCCAGTAACAAGAAATGTTTGCGTTGCCGAGAACATCGCCCGAAGAGGGAAATGAATCCAGGAGAATGGGAATGCCCCTCACCAAACATGGTCTACCGGAAGTGTGATGGTGAGCGGCCTAAAGGAGGAGCAAGTGACGAGTACGAGGAGCAGCTATGGGAGTCACCAAGGGGAAGATGA 1338 45.89 MAKTLFVSVWNPRSTVMSAPKFMYFGTAISRTTSRALSPLLFPRRLPPKLISLIKCSSSTGLDSASSGGADASQSYSGLTHHPWPEWVSFVDGLRTKGYLVEPNVEDANGDGSGGDVATTSVNDYNDMNVLKDACLNFARERYDIFKSLSTDDIQTLVKDGCPNLFRKVVNSAKRLRAYVQLDEGDVCSTCNLRGSCGRAYVILKETEATARTVDVARLLLTYALEPVVLSGGDKPPGRERVEVSARKLLSELLKLSEKPIDASAVKPNTKSTRRKEKPSKFTDDALSQNVEMKRGDWMCTKCNFLNFSRNRKCLKCNEDGPKRVRADDIEMKSGDWICSECNFMNFSRNVNCLKCKTERPKKIDVGEIEMKKGDWVCPKCTFMNFASNKKCLRCREHRPKREMNPGEWECPSPNMVYRKCDGERPKGGASDEYEEQLWESPRGR 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1619315 1622488 + CmoCh10G003580.1 Cmo10g00358 389704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00358 445 PANTHER ASPARAGINE-RICH PROTEIN 56 362 - -
Cmo10g00358 445 PANTHER ASPARAGINE-RICH PROTEIN 357 440 - -
Cmo10g00358 445 SUPERFAMILY Ran binding protein zinc finger-like 368 401 IPR036443 -
Cmo10g00358 445 SUPERFAMILY Ran binding protein zinc finger-like 289 322 IPR036443 -
Cmo10g00358 445 Pfam Zn-finger in Ran binding protein and others 295 317 IPR001876 -
Cmo10g00358 445 Pfam Zn-finger in Ran binding protein and others 333 361 IPR001876 -
Cmo10g00358 445 Pfam Zn-finger in Ran binding protein and others 372 399 IPR001876 -
Cmo10g00358 445 Gene3D - 365 402 - -
Cmo10g00358 445 Gene3D - 286 324 - -
Cmo10g00358 445 Gene3D - 325 363 - -
Cmo10g00358 445 ProSiteProfiles Zinc finger RanBP2 type profile. 294 323 IPR001876 -
Cmo10g00358 445 SUPERFAMILY Ran binding protein zinc finger-like 328 363 IPR036443 -
Cmo10g00358 445 MobiDBLite consensus disorder prediction 264 286 - -
Cmo10g00358 445 ProSitePatterns Zinc finger RanBP2-type signature. 298 317 IPR001876 -
Cmo10g00358 445 ProSitePatterns Zinc finger RanBP2-type signature. 376 395 IPR001876 -
Cmo10g00358 445 ProSitePatterns Zinc finger RanBP2-type signature. 337 356 IPR001876 -
Cmo10g00358 445 MobiDBLite consensus disorder prediction 269 286 - -
Cmo10g00358 445 ProSiteProfiles Zinc finger RanBP2 type profile. 333 362 IPR001876 -
Cmo10g00358 445 MobiDBLite consensus disorder prediction 422 445 - -
Cmo10g00358 445 PANTHER ZINC FINGER PROTEIN 56 362 - -
Cmo10g00358 445 PANTHER ZINC FINGER PROTEIN 357 440 - -
Cmo10g00358 445 SMART zf_4 296 320 IPR001876 -
Cmo10g00358 445 SMART zf_4 335 359 IPR001876 -
Cmo10g00358 445 SMART zf_4 374 398 IPR001876 -
Cmo10g00358 445 ProSiteProfiles Zinc finger RanBP2 type profile. 372 401 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00358 - - - cpep:111779556 845.114
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00358 Cmo11g00322 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01128 Cmo-Chr5:8991732 Cmo10g00358 Cmo-Chr10:1619315 6.02E-17 dispersed
Cmo06g00060 Cmo-Chr6:371499 Cmo10g00358 Cmo-Chr10:1619315 1.66E-16 dispersed
Cmo10g00358 Cmo-Chr10:1619315 Cmo15g01024 Cmo-Chr15:6041431 1.20E-72 dispersed
Cmo10g00358 Cmo-Chr10:1619315 Cmo11g00322 Cmo-Chr11:1564019 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g196 . . . . . . . Bma12g01246 . . Cma10g00332 Cma11g00317 Car10g00314 Car11g00292 Sed08g0408 . Cpe04g01365 Bhi02g00151 Tan09g1810 Cmetu09g0719 . Hepe09g0397 . . Cla06g01415 Cam06g1568 Cec06g1628 Cco06g1620 Clacu06g1530 Cmu06g1484 Cre06g2293 . . . Cone19ag0337 . . . . . Blo15g00057 . . Bpe07g01050 . . . . Cmo10g00358 Cmo11g00322 . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01277 Csa01g00440 Chy02g02305 Cme02g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007286 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 3 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00358 Cmo_Chr10 FPKM 0.0 0.0 0.0 0.0 0.655538 0.0 0.326582 0.073927 0.0 0.0