Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00361 ATGGCGTTCGTTGGGTTTATTGGTTTGGATGGTCTGAGCTTCGAATTGGCTACTTCACTAATCCGTGGCGGTTACAGAGTCAAAGCTTATGAGATAAATCAGGCCTTGACAGATAAATTTTTGAAGTTAGGGGGAATAAGTTGTGCCAGTACTGTAGAGGCAGGGGAAGATGTTGCAGCATTGCTTGTATTGAACAGTCATTTCAATCTGATAAATGATTTATCTTTTTCTGATGCTATCCCAGGGTTGCATAAGGATGTTGTTGTTGTTCTTGTCCGTTCAACTCTACTGGAGAAGGATGTCCACAACTCGAAAAAGCTTTCTACAGTTAATTTTGAGATACCTAATCTTGTTGAAGCATATGTCTTTAAGGGTGTTTCTGAAGCTCTGGACGGTCAACTCATGATGATAACTTCGGGTAGGGCAGCTGCAATTTCTAGAGCTCGACCCTTTCTATCAGCTATGTGTGGAAAGCTTTTCATTTTTGAAGGTGAAGTTGATGCTGGAAGTAAAACAAATATGGTAATTGAGCTCCTTAAAGGAATTCATTTTGTGGCTTCACTGGAAGCTATTTCCCTGGGTATTAAAGCTGGAATTCACCCCTGGATAATCTACGACATTATTTCAAATGCTGCTGGGAATTCATGGGTTTTCAAGAATCATGTTCCCCACTTGTTAAAGGGCAATATTAGACCTGAGTTTTTGAGAAATTTGGTTCAAAATTTGTTATTTGGCACAACTACTGGTATCTCTCTTGCTGAAGGGGATTGTCATGGATAA 780 39.87 MAFVGFIGLDGLSFELATSLIRGGYRVKAYEINQALTDKFLKLGGISCASTVEAGEDVAALLVLNSHFNLINDLSFSDAIPGLHKDVVVVLVRSTLLEKDVHNSKKLSTVNFEIPNLVEAYVFKGVSEALDGQLMMITSGRAAAISRARPFLSAMCGKLFIFEGEVDAGSKTNMVIELLKGIHFVASLEAISLGIKAGIHPWIIYDIISNAAGNSWVFKNHVPHLLKGNIRPEFLRNLVQNLLFGTTTGISLAEGDCHG 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1638100 1642511 - CmoCh10G003610.1 Cmo10g00361 389707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00361 259 Gene3D - 2 164 - -
Cmo10g00361 259 Gene3D - 168 245 IPR013328 GO:0016491
Cmo10g00361 259 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 4 160 IPR006115 GO:0050661
Cmo10g00361 259 PANTHER ALDOLASE-RELATED 4 232 - -
Cmo10g00361 259 PANTHER KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN 4 232 - -
Cmo10g00361 259 PIRSF HIBADH 1 241 IPR015815 GO:0016491
Cmo10g00361 259 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 163 IPR036291 -
Cmo10g00361 259 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 168 239 IPR008927 -
Cmo10g00361 259 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 168 239 IPR029154 GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00361 - - - bhj:120070914 405.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00361 Cmo-Chr10:1638100 Cmo13g00517 Cmo-Chr13:6063491 1.94E-11 dispersed
Cmo10g00361 Cmo-Chr10:1638100 Cmo01g00062 Cmo-Chr1:228312 1.49E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g180 . . Bda06g00824 . . . . Bma12g01248 . . . . Car10g00316 . . . . Bhi02g00155 . . . Hepe09g0400 . . Cla06g01412 Cam06g1565 Cec06g1625 Cco06g1617 Clacu06g1527 Cmu06g1481 Cre06g2290 . . . Cone19ag0357 . . . . . Blo15g00055 . . Bpe07g01052 . . . . Cmo10g00361 . . . . . . . . . . . . . . . . . . . . . Lsi06g01272 Csa01g00444 Chy02g02301 Cme02g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0050384 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo10g00361 Cmo_Chr10 FPKM 17.064516 16.890791 10.660089 7.708375 5.864781 6.335804 5.294055 10.745718 9.235799 11.16559