Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00385 ATGGGAGACCAAGATGAGCTCTGCAACACCAGGCTTGGCCTTGCCTTAGGATTTGGCGATTATGTTCCAAAAAAGATGCAGAAAGCCAACAAACAGCCCAAGTTCTTGTCTGACCTCTCTTTCTCTCTCATTCCAAGACAGGAATCCGCCATTAACATGCAGCTTCAAGCTAATGAACCCTCCAAGGATTCCTCCTTTGGAATTAGTAGAGATCGGTCATCCACTAATTATAATTGCAACGCCATTAGTGGTGGATTAGAAAGAGAGAGAAAAAAGCTTAGGCTTTCCCAAGAACAGCTCACTTTGCTTGAAGAAACCTTCAAACTTCACACCACCTTGAATCTGGCCCAGAAACTAGCACTTGCCCAGCAATTAAACCTCAAAGCTCGACAAGTGGAAGTTTGGTTTCAAAACAGGCGTGCAAGGTCGAAATTGAAACAAACAGAAGTAGATTGCGAGTTCTTGAAGAAATATTGCGAAAGGCTGAAGGAAGAGAATGGAAGGTTGAAGAAAGAGTTGCAGGAATTAAGATCCACAAAACTTGGAGCTTCACAATTGTATATTCAGCTACCTAAGGCGGCGACGCTCACAATTTGTCCCTCATGCGACAAAACTACGAGGCCGGCCGCCGCCGTGGAGGCCCATTCTCCGCCACAATAA 660 45.15 MGDQDELCNTRLGLALGFGDYVPKKMQKANKQPKFLSDLSFSLIPRQESAINMQLQANEPSKDSSFGISRDRSSTNYNCNAISGGLERERKKLRLSQEQLTLLEETFKLHTTLNLAQKLALAQQLNLKARQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSTKLGASQLYIQLPKAATLTICPSCDKTTRPAAAVEAHSPPQ 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1753130 1754226 - CmoCh10G003850.1 Cmo10g00385 389731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00385 219 CDD homeodomain 90 147 IPR001356 GO:0003677
Cmo10g00385 219 PANTHER - 19 206 - -
Cmo10g00385 219 Pfam Homeobox associated leucine zipper 146 178 IPR003106 GO:0006355|GO:0043565
Cmo10g00385 219 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Cmo10g00385 219 Coils Coil 145 179 - -
Cmo10g00385 219 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Cmo10g00385 219 SUPERFAMILY Homeodomain-like 74 147 IPR009057 -
Cmo10g00385 219 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Cmo10g00385 219 SMART halz 146 189 IPR003106 GO:0006355|GO:0043565
Cmo10g00385 219 Coils Coil 86 106 - -
Cmo10g00385 219 Gene3D - 83 151 - -
Cmo10g00385 219 SMART HOX_1 88 150 IPR001356 GO:0003677
Cmo10g00385 219 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 19 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00385 Cmo-Chr10:1753130 Cmo17g00902 Cmo-Chr17:8159676 6.02E-49 dispersed
Cmo10g00385 Cmo-Chr10:1753130 Cmo11g00348 Cmo-Chr11:1702662 2.28E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10449 PF00046 Homeodomain 1.50E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00385 K09338 - csv:101203427 234.187