Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00394 ATGGCGGTGGATCTGGCAGTGTTTCCGGCGAAGATGGAGGATCATACGGCGATTCTAGAAGCCTCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCGCCTCTTATCCAAACAGCCCTCTCAAACCCCTAATTGCTCTGAAATCGCCGATTTCACCGTCTCCAAATTCAAGCGCCTAATTTCCCTCTTGAACAGAACCGGCCACGCTAGATTCCGTCGCGGACCCTCCGATTCCCCAAATCCCCTCCCTAATTCCCCCAATCCAACCTCCAAAATCGATTGCCCTAACCCTAATTTCACCCCTGTCGCCAAATCCCCTGATTCTAGGGCTCCGACTGACTCCACCACGACCTCGTCTTTTGTCTCCACTATCACCGGCGACGGCAGCGTTTCACTCTTTGCGACTCCGGCAATCTCCTCCGGTAAGCCGCCGCTGTCGGTGAAGAGGAAGTCCGATGACATATCTCGATTTGGCTGCAAGACTCCTTCTAAGCCCTGTCACTGTGCGAAGCGAAGGAAATCTGGAGGGAAAAAAACGGTACGAGTCCCGGCGATCAGTTCTAAAATCGCCGACATACCTCCCGATGAATACTCTTGGAGAAAGTACGGCCAAAAGCCCATTAAAGGCTCCCCCTATCCTAGAGGGTATTATAGATGCAGCACCGTCAAAGGTTGTCCGGCGAGGAAAAAGGTGGAAAGAGTTCGTGACGAACCGACCATGCTCCTCGTAACATACGACGGGGATCACCGTCACCCGCAGCCTCCGGTGACCCATCTTAACGTGGGTGTCGTTTCCCAGAAATCTTGA 810 53.33 MAVDLAVFPAKMEDHTAILEASSAGLQSMEHLIRLLSKQPSQTPNCSEIADFTVSKFKRLISLLNRTGHARFRRGPSDSPNPLPNSPNPTSKIDCPNPNFTPVAKSPDSRAPTDSTTTSSFVSTITGDGSVSLFATPAISSGKPPLSVKRKSDDISRFGCKTPSKPCHCAKRRKSGGKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERVRDEPTMLLVTYDGDHRHPQPPVTHLNVGVVSQKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1782511 1783913 - CmoCh10G003940.1 Cmo10g00394 389740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00394 269 MobiDBLite consensus disorder prediction 68 121 - -
Cmo10g00394 269 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 8 256 - -
Cmo10g00394 269 SMART WRKY_cls 194 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00394 269 Gene3D WRKY domain 178 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo10g00394 269 Pfam Plant zinc cluster domain 154 192 IPR018872 -
Cmo10g00394 269 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 256 IPR044810 GO:0003700
Cmo10g00394 269 MobiDBLite consensus disorder prediction 92 121 - -
Cmo10g00394 269 Pfam WRKY DNA -binding domain 196 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00394 269 ProSiteProfiles WRKY domain profile. 189 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00394 269 SUPERFAMILY WRKY DNA-binding domain 192 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00394 Cmo11g00351 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00394 Cmo-Chr10:1782511 Cmo09g00520 Cmo-Chr9:2424703 9.12E-75 dispersed
Cmo10g00394 Cmo-Chr10:1782511 Cmo11g00351 Cmo-Chr11:1720993 1.56E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10450 PF03106 WRKY 7.30E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00394 - - bhj:120070667 404.445