Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00402 ATGGATAGTTTCGGAAATGATTGCATGAATTACTTCGGGAGTGATATCTTCATACCAACGGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGTTTCCGGATACTACGATTCGAGTTCGCCGGAGGGAGTTCTGTCGTCGTCTTCGGCTACGAAGAACATAGCATCGGAGAGGAATAGGAGAAGGAAGCTTAACGAGAGGCTTTTTGCGCTCCGATCGGTCGTTCCTAATATAACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAGATTTACATGAGCAAGAGAGGAGGGTTCAAACTGAAATTTCCGAGCTCGAATCAGGAAAGTTTAAGATAACAGGGTGTGAATTTGACCAGGAGCTTCCCTTGTTGCTCAGACCTAAGAGGAAGAAAACTGAGAAGTACTTCAGTTATGGATCTCCTGCTTCAAGAACTTCCCCCATTGAAGTCCAGGATCTTAGTGTAACATACATGGGGGACAGAACAATAGCGGTGAGCATGACATGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTCTTTGAATCACTGAAGCTCAAGATCATCACTGCCAATATTTCTGCTGTCTCTGGAAGGCTTTTGAAGACTGTCTTCATTGAGGTAAACTACCTTCTCCCCCTCTTGATATTCCATCAAATTAAATGA 690 43.62 MDSFGNDCMNYFGSDIFIPTEELDSWGFDEPVSGYYDSSSPEGVLSSSSATKNIASERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRVQTEISELESGKFKITGCEFDQELPLLLRPKRKKTEKYFSYGSPASRTSPIEVQDLSVTYMGDRTIAVSMTCCKRADSMVKLCEVFESLKLKIITANISAVSGRLLKTVFIEVNYLLPLLIFHQIK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1819981 1821107 + CmoCh10G004020.1 Cmo10g00402 389748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00402 229 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 220 - -
Cmo10g00402 229 PANTHER TRANSCRIPTION FACTOR BHLH35 8 220 - -
Cmo10g00402 229 Coils Coil 94 114 - -
Cmo10g00402 229 Gene3D - 46 114 IPR036638 GO:0046983
Cmo10g00402 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Cmo10g00402 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 113 IPR036638 GO:0046983
Cmo10g00402 229 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Cmo10g00402 229 SMART finulus 54 103 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00756 Cmo10g00402 CCT
Cmo10g00402 Cmo12g00920 CCT
Cmo10g00402 Cmo11g00361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00402 Cmo-Chr10:1819981 Cmo11g01748 Cmo-Chr11:12328919 6.46E-23 dispersed
Cmo10g00402 Cmo-Chr10:1819981 Cmo11g00361 Cmo-Chr11:1780118 9.74E-109 wgd
Cmo10g00402 Cmo-Chr10:1819981 Cmo12g00920 Cmo-Chr12:8471988 4.49E-63 wgd
Cmo10g00402 Cmo-Chr10:1819981 Cmo05g00756 Cmo-Chr5:4037644 5.40E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10451 PF00010 HLH 2.50E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00402 - - csv:101203659 310.842