Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00412 ATGGCGGCGGCGGCGGCCGGAAACAATGGTGGCGCGTTGCAGAAGAGTTACTTTGATGTGTTGGGGATTTGCTGTTCTTCAGAAATTCCTCTGATTGAGAATATATTGAAGGAAATTGAAGGGATTAAAGAGATTAAAGTGATTGTCGCTACAAGAACTCTCATTGTTCTTCATGATAATCTCCTCGTTTCTCAAGCACAAATTGTTAAAGCCCTAAATCAAGCAAGACTTGAAGCGAACGTTAGAGCATACGGAGACCAGCAGAAAAATCACCGGAAAAAATGGCCCAGCCCTTATGCGGTGGCGAGTGGGCTGTTGCTGCTGGTTTCGTTTCTCAAATATGTGAATCCTGTTTTCAAATGGATGGCTTTGGCTGCCGTCGCCGCCGGTATCTGGCCCATTGCCCTCAAAAGCTTCACCGCCGTTCGCCATCTTAGAATCGACATCAACATTCTTGCTTTAATTGCCGTGATCGGGACAATTGTGCTGAATGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACAATCGCCGAATGGCTCGAATCCAGAGCCGGCCACAAGGCCAACGCCGTCATGTCGTCCCTTCTAAGCATCGCCCCTCAGAAAGCGGTTCTAGCCGACACGGGCGTAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCGGTGAAGGCTGGTGAGGACATACCCATTGATGGAATCGTTGTGGAGGGAAAATGCGAAGTGGATGAGAAAACCCTTACAGGTGAATCTTTCCCTGTTGCCAAACAGAAGGATTCCACTGTTTGGGCTGGTACCATTAATTTAAACGGCTATGTTACTGTAAAAACTACTGCTCTTGCTGAAGATTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCTCAGAATAGTAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCTAAATTCTATACTCCAGCTGTTATAATCATATCAACTGGCATAGCGGTGATTCCATTTGCTTTGAGACTGCACAATCGCAGCCATTGGTTTCACTTGGCACTGGTTGTGCTAGTGAGCGCGTGTCCCTGTGCACTCATCCTTTCGACCCCTGTTGCGTCTTTCTGTGCACTTACCAAGGCAGCAACCTCTGGTCTCTTGATCAAAGGAGGTGACTGCCTCGAAACTCTTGGCAAGATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGGGAATTTATGGTCACTGAATTTCAAGCTCTTGATAAGGAAAATATAAGCTTAGACACATTGCTATACTGGGTGTCGAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCATTAACCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTCCCTGGAGAAGGTGTCCATGGGAGAATTGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTACAAGAGCCAATTGTGAAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGAAGGACTGTTGGATACGTTTTCTGTGGGACTACTGCAGCTGGTATCTTTACTCTATCTGATTCTTGTAGAACCGGAGCTAAGGAGGCCATGGCTGAGATCCGATCTCTCGGTATAAAAACAACCATGCTCACCGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGATTTAGAAACAGTTCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGACCAACAGCCATGATTGGAGATGGTTTAAACGACGCCCCTGCCTTGGCGACAGCTGATATTGGTATATCAATGGGAATCTCTGGTTCAGCTCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGACATCAGGAAAATTCCGAAGGCCATTCGACTCGCAAGAAGAGCTAATAGGAAAGTAATCGAAAATGTGATTCTGTCGGTTGCTCCTAGGACTGCTATACTTGGCCTGGCATTTGGGGGCCATCCACTTGTTTGGGCAGCTGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTTAACAGTATGCTCCTGCTGCGAGGAACTGAAGGACACAAAGGGAAAAAGGCTGGCATGTTTTCTGCTTCTCACTGTTCCTCCAAACATAAATGTTGTCATGTTGGTAGCCATTCAGAAGAACATGGTGGTCACACCCATGATCACGGTTGCAGCAATGAAAGTTCCCACTCTTCTAGTCATCATCAACACCACCATCACCATCACCATCACCATGAGCATGAGGACTGCGGCTCTCTCAGGAAAACTCATAATGGTTGCTCAACTCAGAAATGTGCTTCTACGTGTGATTCTGGGATGAAAAATTTGAGCTCATGCAAGAAAAGTAAACTCGTGGACTCATGTTCTAGGGCGGATGATCCTGCTGGCAGTGTAAAACCCTTTGAACATGAGCATTGCGTCCATAACAACCAGCCCGATGAACATGAACATTGCGTCCATAACAACCAGCCCGATGAACATGAACACTGCGTCCATAACAACCAGCCCGATGAACATGAACACTGCGTCCATAACAACCATCCCGATGAACATGAACACTGCGTCCATAACAACCGGCCCGATGAACATGAACATTGCGTCCATAACAACCATCCCGATGAACATGAGCACTGCGTCCATGACAACCAGCCCGATGAACATGAACATCATACCCATTTTTCATGTGATGATCATCATGTCGAGGACGAACATTGCTCTCTGAAGAATACACTAGAGTTTTGCTCGTTTCCGAGATGTGCATCAAATTCATGTGAGAAAATCCAGTGCACAAGCTCACCCGCCAGCCTTGATGGATCTGCAGGCAGTGATGAGCTCCATGAAAGTGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGAAATCCAAACTCTCAAATGTGATTTGGATGACAGCCACTCATCCAGTCCTGATCATCATAATGGTAATGGCTGTTGCTCACAAAAGAACTCTCAGAAGGTTTCTTTATCTCATCCAATGTGTCATTCTGAGACCTGCAATTCAAGTCCTTGTGGGAAAACCAAATGTGTGGATTCAACTGAGAAGCAACACACGCCTGAAGCCAGTCTAGAACTCCTCCAAGACCACAACCATTGCCACCAAGGAAGCTTCGACACTTCGAATTTCGTCTTGGAATCCCAGGAAAACCACGGGAAAAGCTGCAGTGGACCTTGTAAATCAAGACCACTAAGCAGGTGCACAGAGGATGAATGCACGGAAAGGGCTGAAATGATAGTTGATTGTGATGAAGCAAACGAGCACCACAAGATGAAACAACATCATTGCCATACTCATTTGAGTCTTGAAAATGAAGGAGTTCATCCTCATTGCAAGGCATCAAAAGGAGATAACGATGGAGCAATCAACAAAACCACAAATATCAAGCTCGAAGCAGCAGACCATTCGAACCCGAAACACGGCAACACTTGTAAGGCTTTGGAAAACAGAGAGACAAACAACAACTGTAAAACCTGCAGAAGAGGAAGCTCACAACTCAAAATTGGCAAAACTTGTGCAGGCTTGAAGAAGAACAGAGAAATACGTGGGTGTTGTAAGAGCTACATGAGGGAGTGCTGCAGGAAGCATGGTGATATCAGAATGGCAGTCCGAGGAGGCTTAAACGAAATCATCATAGAATAG 3735 45.62 MAAAAAGNNGGALQKSYFDVLGICCSSEIPLIENILKEIEGIKEIKVIVATRTLIVLHDNLLVSQAQIVKALNQARLEANVRAYGDQQKNHRKKWPSPYAVASGLLLLVSFLKYVNPVFKWMALAAVAAGIWPIALKSFTAVRHLRIDINILALIAVIGTIVLNDYLEAATIVFLFTIAEWLESRAGHKANAVMSSLLSIAPQKAVLADTGVVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNSKSRTQRFIDKCAKFYTPAVIIISTGIAVIPFALRLHNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDCLETLGKIKIMAFDKTGTITRGEFMVTEFQALDKENISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSINPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCETVPEIKDEAKDGRTVGYVFCGTTAAGIFTLSDSCRTGAKEAMAEIRSLGIKTTMLTGDSSAAALQAQKELGKDLETVHAELLPEDKTRLINDFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKIPKAIRLARRANRKVIENVILSVAPRTAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTEGHKGKKAGMFSASHCSSKHKCCHVGSHSEEHGGHTHDHGCSNESSHSSSHHQHHHHHHHHHEHEDCGSLRKTHNGCSTQKCASTCDSGMKNLSSCKKSKLVDSCSRADDPAGSVKPFEHEHCVHNNQPDEHEHCVHNNQPDEHEHCVHNNQPDEHEHCVHNNHPDEHEHCVHNNRPDEHEHCVHNNHPDEHEHCVHDNQPDEHEHHTHFSCDDHHVEDEHCSLKNTLEFCSFPRCASNSCEKIQCTSSPASLDGSAGSDELHESGCCTHNTQSAQHDHEIQTLKCDLDDSHSSSPDHHNGNGCCSQKNSQKVSLSHPMCHSETCNSSPCGKTKCVDSTEKQHTPEASLELLQDHNHCHQGSFDTSNFVLESQENHGKSCSGPCKSRPLSRCTEDECTERAEMIVDCDEANEHHKMKQHHCHTHLSLENEGVHPHCKASKGDNDGAINKTTNIKLEAADHSNPKHGNTCKALENRETNNNCKTCRRGSSQLKIGKTCAGLKKNREIRGCCKSYMRECCRKHGDIRMAVRGGLNEIIIE 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1870225 1876197 - CmoCh10G004120.1 Cmo10g00412 389758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00412 1244 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 172 675 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00412 1244 CDD P-type_ATPase_HM 100 701 - -
Cmo10g00412 1244 Gene3D - 187 301 - -
Cmo10g00412 1244 Pfam E1-E2 ATPase 208 376 - -
Cmo10g00412 1244 SUPERFAMILY Calcium ATPase, transmembrane domain M 149 392 IPR023298 -
Cmo10g00412 1244 SUPERFAMILY HMA, heavy metal-associated domain 12 84 IPR036163 GO:0046872
Cmo10g00412 1244 SUPERFAMILY HAD-like 398 700 IPR036412 -
Cmo10g00412 1244 SFLD C1.7: P-type atpase like 381 651 - -
Cmo10g00412 1244 MobiDBLite consensus disorder prediction 733 755 - -
Cmo10g00412 1244 Gene3D - 389 650 IPR023214 -
Cmo10g00412 1244 Pfam haloacid dehalogenase-like hydrolase 394 613 - -
Cmo10g00412 1244 Gene3D - 11 83 - -
Cmo10g00412 1244 ProSitePatterns Hypothetical cof family signature 2. 599 621 - -
Cmo10g00412 1244 SFLD p-type atpase 381 651 IPR044492 -
Cmo10g00412 1244 PRINTS P-type cation-transporting ATPase superfamily signature 247 261 - -
Cmo10g00412 1244 PRINTS P-type cation-transporting ATPase superfamily signature 398 412 - -
Cmo10g00412 1244 PRINTS P-type cation-transporting ATPase superfamily signature 545 555 - -
Cmo10g00412 1244 PRINTS P-type cation-transporting ATPase superfamily signature 599 618 - -
Cmo10g00412 1244 PRINTS P-type cation-transporting ATPase superfamily signature 623 635 - -
Cmo10g00412 1244 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 149 704 - -
Cmo10g00412 1244 SUPERFAMILY Calcium ATPase, transduction domain A 211 297 IPR008250 -
Cmo10g00412 1244 ProSiteProfiles Heavy-metal-associated domain profile. 15 81 IPR006121 GO:0046872
Cmo10g00412 1244 Gene3D - 409 531 IPR023299 GO:0000166
Cmo10g00412 1244 PRINTS H+-transporting ATPase (proton pump) signature 599 615 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00412 1244 PRINTS H+-transporting ATPase (proton pump) signature 631 656 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo10g00412 1244 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 149 702 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo10g00412 1244 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 12 1226 - -
Cmo10g00412 1244 ProSitePatterns E1-E2 ATPases phosphorylation site. 400 406 IPR018303 -
Cmo10g00412 1244 MobiDBLite consensus disorder prediction 733 776 - -
Cmo10g00412 1244 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 12 1226 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00745 Cmo10g00412 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00745 Cmo-Chr5:3933660 Cmo10g00412 Cmo-Chr10:1870225 0 dispersed
Cmo16g00272 Cmo-Chr16:1209670 Cmo10g00412 Cmo-Chr10:1870225 2.07E-60 dispersed
Cmo02g00508 Cmo-Chr2:2797137 Cmo10g00412 Cmo-Chr10:1870225 1.28E-56 transposed
Cmo10g00412 Cmo-Chr10:1870225 Cmo05g00742 Cmo-Chr5:3902126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00412 K01534 - csv:101211188 1597.41