Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00412 | ATGGCGGCGGCGGCGGCCGGAAACAATGGTGGCGCGTTGCAGAAGAGTTACTTTGATGTGTTGGGGATTTGCTGTTCTTCAGAAATTCCTCTGATTGAGAATATATTGAAGGAAATTGAAGGGATTAAAGAGATTAAAGTGATTGTCGCTACAAGAACTCTCATTGTTCTTCATGATAATCTCCTCGTTTCTCAAGCACAAATTGTTAAAGCCCTAAATCAAGCAAGACTTGAAGCGAACGTTAGAGCATACGGAGACCAGCAGAAAAATCACCGGAAAAAATGGCCCAGCCCTTATGCGGTGGCGAGTGGGCTGTTGCTGCTGGTTTCGTTTCTCAAATATGTGAATCCTGTTTTCAAATGGATGGCTTTGGCTGCCGTCGCCGCCGGTATCTGGCCCATTGCCCTCAAAAGCTTCACCGCCGTTCGCCATCTTAGAATCGACATCAACATTCTTGCTTTAATTGCCGTGATCGGGACAATTGTGCTGAATGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACAATCGCCGAATGGCTCGAATCCAGAGCCGGCCACAAGGCCAACGCCGTCATGTCGTCCCTTCTAAGCATCGCCCCTCAGAAAGCGGTTCTAGCCGACACGGGCGTAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCGGTGAAGGCTGGTGAGGACATACCCATTGATGGAATCGTTGTGGAGGGAAAATGCGAAGTGGATGAGAAAACCCTTACAGGTGAATCTTTCCCTGTTGCCAAACAGAAGGATTCCACTGTTTGGGCTGGTACCATTAATTTAAACGGCTATGTTACTGTAAAAACTACTGCTCTTGCTGAAGATTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCTCAGAATAGTAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCTAAATTCTATACTCCAGCTGTTATAATCATATCAACTGGCATAGCGGTGATTCCATTTGCTTTGAGACTGCACAATCGCAGCCATTGGTTTCACTTGGCACTGGTTGTGCTAGTGAGCGCGTGTCCCTGTGCACTCATCCTTTCGACCCCTGTTGCGTCTTTCTGTGCACTTACCAAGGCAGCAACCTCTGGTCTCTTGATCAAAGGAGGTGACTGCCTCGAAACTCTTGGCAAGATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGGGAATTTATGGTCACTGAATTTCAAGCTCTTGATAAGGAAAATATAAGCTTAGACACATTGCTATACTGGGTGTCGAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCATTAACCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTCCCTGGAGAAGGTGTCCATGGGAGAATTGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTACAAGAGCCAATTGTGAAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGAAGGACTGTTGGATACGTTTTCTGTGGGACTACTGCAGCTGGTATCTTTACTCTATCTGATTCTTGTAGAACCGGAGCTAAGGAGGCCATGGCTGAGATCCGATCTCTCGGTATAAAAACAACCATGCTCACCGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGATTTAGAAACAGTTCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGACCAACAGCCATGATTGGAGATGGTTTAAACGACGCCCCTGCCTTGGCGACAGCTGATATTGGTATATCAATGGGAATCTCTGGTTCAGCTCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGACATCAGGAAAATTCCGAAGGCCATTCGACTCGCAAGAAGAGCTAATAGGAAAGTAATCGAAAATGTGATTCTGTCGGTTGCTCCTAGGACTGCTATACTTGGCCTGGCATTTGGGGGCCATCCACTTGTTTGGGCAGCTGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTTAACAGTATGCTCCTGCTGCGAGGAACTGAAGGACACAAAGGGAAAAAGGCTGGCATGTTTTCTGCTTCTCACTGTTCCTCCAAACATAAATGTTGTCATGTTGGTAGCCATTCAGAAGAACATGGTGGTCACACCCATGATCACGGTTGCAGCAATGAAAGTTCCCACTCTTCTAGTCATCATCAACACCACCATCACCATCACCATCACCATGAGCATGAGGACTGCGGCTCTCTCAGGAAAACTCATAATGGTTGCTCAACTCAGAAATGTGCTTCTACGTGTGATTCTGGGATGAAAAATTTGAGCTCATGCAAGAAAAGTAAACTCGTGGACTCATGTTCTAGGGCGGATGATCCTGCTGGCAGTGTAAAACCCTTTGAACATGAGCATTGCGTCCATAACAACCAGCCCGATGAACATGAACATTGCGTCCATAACAACCAGCCCGATGAACATGAACACTGCGTCCATAACAACCAGCCCGATGAACATGAACACTGCGTCCATAACAACCATCCCGATGAACATGAACACTGCGTCCATAACAACCGGCCCGATGAACATGAACATTGCGTCCATAACAACCATCCCGATGAACATGAGCACTGCGTCCATGACAACCAGCCCGATGAACATGAACATCATACCCATTTTTCATGTGATGATCATCATGTCGAGGACGAACATTGCTCTCTGAAGAATACACTAGAGTTTTGCTCGTTTCCGAGATGTGCATCAAATTCATGTGAGAAAATCCAGTGCACAAGCTCACCCGCCAGCCTTGATGGATCTGCAGGCAGTGATGAGCTCCATGAAAGTGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGAAATCCAAACTCTCAAATGTGATTTGGATGACAGCCACTCATCCAGTCCTGATCATCATAATGGTAATGGCTGTTGCTCACAAAAGAACTCTCAGAAGGTTTCTTTATCTCATCCAATGTGTCATTCTGAGACCTGCAATTCAAGTCCTTGTGGGAAAACCAAATGTGTGGATTCAACTGAGAAGCAACACACGCCTGAAGCCAGTCTAGAACTCCTCCAAGACCACAACCATTGCCACCAAGGAAGCTTCGACACTTCGAATTTCGTCTTGGAATCCCAGGAAAACCACGGGAAAAGCTGCAGTGGACCTTGTAAATCAAGACCACTAAGCAGGTGCACAGAGGATGAATGCACGGAAAGGGCTGAAATGATAGTTGATTGTGATGAAGCAAACGAGCACCACAAGATGAAACAACATCATTGCCATACTCATTTGAGTCTTGAAAATGAAGGAGTTCATCCTCATTGCAAGGCATCAAAAGGAGATAACGATGGAGCAATCAACAAAACCACAAATATCAAGCTCGAAGCAGCAGACCATTCGAACCCGAAACACGGCAACACTTGTAAGGCTTTGGAAAACAGAGAGACAAACAACAACTGTAAAACCTGCAGAAGAGGAAGCTCACAACTCAAAATTGGCAAAACTTGTGCAGGCTTGAAGAAGAACAGAGAAATACGTGGGTGTTGTAAGAGCTACATGAGGGAGTGCTGCAGGAAGCATGGTGATATCAGAATGGCAGTCCGAGGAGGCTTAAACGAAATCATCATAGAATAG | 3735 | 45.62 | MAAAAAGNNGGALQKSYFDVLGICCSSEIPLIENILKEIEGIKEIKVIVATRTLIVLHDNLLVSQAQIVKALNQARLEANVRAYGDQQKNHRKKWPSPYAVASGLLLLVSFLKYVNPVFKWMALAAVAAGIWPIALKSFTAVRHLRIDINILALIAVIGTIVLNDYLEAATIVFLFTIAEWLESRAGHKANAVMSSLLSIAPQKAVLADTGVVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNSKSRTQRFIDKCAKFYTPAVIIISTGIAVIPFALRLHNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDCLETLGKIKIMAFDKTGTITRGEFMVTEFQALDKENISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSINPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCETVPEIKDEAKDGRTVGYVFCGTTAAGIFTLSDSCRTGAKEAMAEIRSLGIKTTMLTGDSSAAALQAQKELGKDLETVHAELLPEDKTRLINDFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKIPKAIRLARRANRKVIENVILSVAPRTAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTEGHKGKKAGMFSASHCSSKHKCCHVGSHSEEHGGHTHDHGCSNESSHSSSHHQHHHHHHHHHEHEDCGSLRKTHNGCSTQKCASTCDSGMKNLSSCKKSKLVDSCSRADDPAGSVKPFEHEHCVHNNQPDEHEHCVHNNQPDEHEHCVHNNQPDEHEHCVHNNHPDEHEHCVHNNRPDEHEHCVHNNHPDEHEHCVHDNQPDEHEHHTHFSCDDHHVEDEHCSLKNTLEFCSFPRCASNSCEKIQCTSSPASLDGSAGSDELHESGCCTHNTQSAQHDHEIQTLKCDLDDSHSSSPDHHNGNGCCSQKNSQKVSLSHPMCHSETCNSSPCGKTKCVDSTEKQHTPEASLELLQDHNHCHQGSFDTSNFVLESQENHGKSCSGPCKSRPLSRCTEDECTERAEMIVDCDEANEHHKMKQHHCHTHLSLENEGVHPHCKASKGDNDGAINKTTNIKLEAADHSNPKHGNTCKALENRETNNNCKTCRRGSSQLKIGKTCAGLKKNREIRGCCKSYMRECCRKHGDIRMAVRGGLNEIIIE | 1244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1870225 | 1876197 | - | CmoCh10G004120.1 | Cmo10g00412 | 389758 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00412 | 1244 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 172 | 675 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00412 | 1244 | CDD | P-type_ATPase_HM | 100 | 701 | - | - | |
Cmo10g00412 | 1244 | Gene3D | - | 187 | 301 | - | - | |
Cmo10g00412 | 1244 | Pfam | E1-E2 ATPase | 208 | 376 | - | - | |
Cmo10g00412 | 1244 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 149 | 392 | IPR023298 | - | |
Cmo10g00412 | 1244 | SUPERFAMILY | HMA, heavy metal-associated domain | 12 | 84 | IPR036163 | GO:0046872 | |
Cmo10g00412 | 1244 | SUPERFAMILY | HAD-like | 398 | 700 | IPR036412 | - | |
Cmo10g00412 | 1244 | SFLD | C1.7: P-type atpase like | 381 | 651 | - | - | |
Cmo10g00412 | 1244 | MobiDBLite | consensus disorder prediction | 733 | 755 | - | - | |
Cmo10g00412 | 1244 | Gene3D | - | 389 | 650 | IPR023214 | - | |
Cmo10g00412 | 1244 | Pfam | haloacid dehalogenase-like hydrolase | 394 | 613 | - | - | |
Cmo10g00412 | 1244 | Gene3D | - | 11 | 83 | - | - | |
Cmo10g00412 | 1244 | ProSitePatterns | Hypothetical cof family signature 2. | 599 | 621 | - | - | |
Cmo10g00412 | 1244 | SFLD | p-type atpase | 381 | 651 | IPR044492 | - | |
Cmo10g00412 | 1244 | PRINTS | P-type cation-transporting ATPase superfamily signature | 247 | 261 | - | - | |
Cmo10g00412 | 1244 | PRINTS | P-type cation-transporting ATPase superfamily signature | 398 | 412 | - | - | |
Cmo10g00412 | 1244 | PRINTS | P-type cation-transporting ATPase superfamily signature | 545 | 555 | - | - | |
Cmo10g00412 | 1244 | PRINTS | P-type cation-transporting ATPase superfamily signature | 599 | 618 | - | - | |
Cmo10g00412 | 1244 | PRINTS | P-type cation-transporting ATPase superfamily signature | 623 | 635 | - | - | |
Cmo10g00412 | 1244 | TIGRFAM | ATPase-IB2_Cd: cadmium-translocating P-type ATPase | 149 | 704 | - | - | |
Cmo10g00412 | 1244 | SUPERFAMILY | Calcium ATPase, transduction domain A | 211 | 297 | IPR008250 | - | |
Cmo10g00412 | 1244 | ProSiteProfiles | Heavy-metal-associated domain profile. | 15 | 81 | IPR006121 | GO:0046872 | |
Cmo10g00412 | 1244 | Gene3D | - | 409 | 531 | IPR023299 | GO:0000166 | |
Cmo10g00412 | 1244 | PRINTS | H+-transporting ATPase (proton pump) signature | 599 | 615 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00412 | 1244 | PRINTS | H+-transporting ATPase (proton pump) signature | 631 | 656 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo10g00412 | 1244 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 149 | 702 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 | |
Cmo10g00412 | 1244 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED | 12 | 1226 | - | - | |
Cmo10g00412 | 1244 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 400 | 406 | IPR018303 | - | |
Cmo10g00412 | 1244 | MobiDBLite | consensus disorder prediction | 733 | 776 | - | - | |
Cmo10g00412 | 1244 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 12 | 1226 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00745 | Cmo10g00412 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00745 | Cmo-Chr5:3933660 | Cmo10g00412 | Cmo-Chr10:1870225 | 0 | dispersed | |
Cmo16g00272 | Cmo-Chr16:1209670 | Cmo10g00412 | Cmo-Chr10:1870225 | 2.07E-60 | dispersed | |
Cmo02g00508 | Cmo-Chr2:2797137 | Cmo10g00412 | Cmo-Chr10:1870225 | 1.28E-56 | transposed | |
Cmo10g00412 | Cmo-Chr10:1870225 | Cmo05g00742 | Cmo-Chr5:3902126 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00412 | K01534 | - | csv:101211188 | 1597.41 |