Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00432 ATGCTCCTTCTCCAAAACACTCCACAATTCGTTTTCGCTTTCCTCGGCGCTTCCTTTGCGTGCGCCATCGCCACCATGGCGAACCCGTTCTTCACGCCAGCGGAGATTGCGAAGCAAGCGGCGTCGTCCGGCGCTAAGCTGATCATAACCCAAGCCGCGTTCGCGGAAAAAGTGAAAAAGCTGCCTCAGGAAAACCAGGGGATTTTGAAAGTGATATTCATCGACTCTCCACCGGAGGGTGGATGTCATTTTACGTCGTTGACTGATGAGGCAAAAGAGGAGGAAATGGCGGATGTGAAATTCAGCCCGGACGACGTCGTTGCGTTGCCATATTCGTCTGGCACGACAGGCCTCCCAAAAGGAGTTATGCTGACTCATAAGGGATTAGTGACCAGCGTGGCTCAACAAGTGGACGGCGAAAATCCACACTTCCATATCCGAAGTAACGACGTCGTTCTGTGTGTGCTTCCTTTGTTTCACATCTACTCATTGAGCTCGATCGTGATGACGTCGTTGCGAGTGGGAGCTGCGATTTTAATCGTCCAGAAATTCGACATTAATTCCCTTGTGGCATTGGTTCCCAAATATAGGGTCACCATTGCTACCGTTGTACCTCCTATTGTACTCGCAATGGTCAAGAGTCCGGTTGTAGACCATTCCGACATGTCGTCCATACGGATCGTGTTGTCGGGAGCCGCACCGCTGGGGAAGAATCTTGAAGATGCCTTTAGAGCCAAGCTTCCCCATGCCATTCTCGCCCAAGGATACGGAATGACTGAGTCAGGATCAGTGTTAACAATGTCATTAGCACTTGCAAGGGAGAAATTCGCAATCAAGTCGGGAGCTTGTGGGACATTAATGAGAAATGCAGAGATGAAGATTGTAAACCCCGAAAATGGAGTTTCTCTTTCAAGGAATCAACCCGGAGAGATTTATGTTAGAAGTCCTCAAATGATGAAAGGGTACCTCAACGACGAAGAGGCCACGAAGGGTATGATCGACGAAAGCGGATGGCTGCACACCGGCGACATGGGTTTAGTTGACGACGACGATGAGCTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAGGTAGCGCCGGCGGAGTTGGAAGGCCTGCTCATTTCCAACGTCCACATTGTCGACGTTGCGGTTATACCTATGAAAGATGAAGTAGCTGGAGAGGTTCCTGTTGCGTTCATTGTCCGGTCAGATGGTTCCAACATCACCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGAAAAATCTTGCGGAGACAACTTAGAGCTCTGCTCCCTGCCAGTATTCCAAACTAG 1398 49.14 MLLLQNTPQFVFAFLGASFACAIATMANPFFTPAEIAKQAASSGAKLIITQAAFAEKVKKLPQENQGILKVIFIDSPPEGGCHFTSLTDEAKEEEMADVKFSPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHFHIRSNDVVLCVLPLFHIYSLSSIVMTSLRVGAAILIVQKFDINSLVALVPKYRVTIATVVPPIVLAMVKSPVVDHSDMSSIRIVLSGAAPLGKNLEDAFRAKLPHAILAQGYGMTESGSVLTMSLALAREKFAIKSGACGTLMRNAEMKIVNPENGVSLSRNQPGEIYVRSPQMMKGYLNDEEATKGMIDESGWLHTGDMGLVDDDDELFIVDRLKELIKYKGFQVAPAELEGLLISNVHIVDVAVIPMKDEVAGEVPVAFIVRSDGSNITEDEIKQYISKQVVFYKRINRVFFVDSIPKSPSGKILRRQLRALLPASIPN 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1969688 1973081 + CmoCh10G004320.1 Cmo10g00432 389778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00432 465 CDD 4CL 1 455 - -
Cmo10g00432 465 Pfam AMP-binding enzyme C-terminal domain 374 449 IPR025110 -
Cmo10g00432 465 Pfam AMP-binding enzyme 2 365 IPR000873 -
Cmo10g00432 465 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 1 458 - -
Cmo10g00432 465 Gene3D - 1 359 IPR042099 -
Cmo10g00432 465 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 1 458 - -
Cmo10g00432 465 Gene3D - 360 461 IPR045851 -
Cmo10g00432 465 ProSitePatterns Putative AMP-binding domain signature. 109 120 IPR020845 -
Cmo10g00432 465 SUPERFAMILY Acetyl-CoA synthetase-like 2 459 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00699 Cmo10g00432 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00432 Cmo-Chr10:1969688 Cmo14g01057 Cmo-Chr14:5785268 0 dispersed
Cmo10g00432 Cmo-Chr10:1969688 Cmo11g00395 Cmo-Chr11:1967164 0 wgd
Cmo10g00432 Cmo-Chr10:1969688 Cmo05g00699 Cmo-Chr5:3587233 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00432 K01904 - csv:101218077 721.079