Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00434 ATGGCAGCCCTCCACATTCTTGGCACCGAAACCGATATCTCGGAGGAGTTTTTGATAGCTCGAGTCATCGACCTCCATGGAAGCATCTCGAGGCTTGAAACCCTAAAGCCATGCAAGGAAGTGAACGGCCTCTTCACCAGCCTAGTGAAATTGTGCATTTTGCCTTGTTCAATAGATGTCTCTACATTGGCACCTCATTTACAAGCCATTCGTGAGAGCCTCATACTTTTATGTGGCCGAGCCGAGGGGTTACTCGAGTTAGAATTCTCGACCATGCTCGGAAAAATCCCGAAACCTCTCAACAATCTTACTCTATTTCCATATTATGGCAACTACATCAAATTAGCCCACCTTGAATACAAGATATTGATTGACAATGGAGTTGTGAATCCAAAAAAGGTAGCTTTTGTGGGGTCCGGTCCTCTTCCTCTAACTTCCATTATATTGGCCATGCAGCACATGAAGAACACGTATTTCGACAACTACGACGTCGATAGCATGGCAAATGAGGTGGCGGGAAAGATCGTGGCTTCGGACGGTGAGTTGGAGGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAGGAGAAGAGCTTGAGGGATACGATTGTGTGTTCTTGGCAGCTCTTGTGGGGTTGAACAAGGAAGATAAAGTGAAGATTTTAAGTCACTTGAGAAAGTATATGAAACAAGGTGGGGTTTTGGTTGTGAGAAGTGCTAAAGGAGGTCGAGCCTTTTTGTACCCCGTGGTTGAGGTCGCCGATATGGTTGGCTTTGACATTCTCTCGATTTTTCATCCCTCCGACGACGTCGTCAATTCCGTTCTCTTGGCTCGCAAGCCTATACTCCTATGA 858 46.04 MAALHILGTETDISEEFLIARVIDLHGSISRLETLKPCKEVNGLFTSLVKLCILPCSIDVSTLAPHLQAIRESLILLCGRAEGLLELEFSTMLGKIPKPLNNLTLFPYYGNYIKLAHLEYKILIDNGVVNPKKVAFVGSGPLPLTSIILAMQHMKNTYFDNYDVDSMANEVAGKIVASDGELEGRMKFWTRDIVEVGEELEGYDCVFLAALVGLNKEDKVKILSHLRKYMKQGGVLVVRSAKGGRAFLYPVVEVADMVGFDILSIFHPSDDVVNSVLLARKPILL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1981529 1982386 + CmoCh10G004340.1 Cmo10g00434 389780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00434 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Cmo10g00434 285 PANTHER NICOTIANAMINE SYNTHASE 1 283 - -
Cmo10g00434 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 240 IPR029063 -
Cmo10g00434 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 11 285 IPR004298 GO:0030410|GO:0030418
Cmo10g00434 285 Gene3D Vaccinia Virus protein VP39 21 282 IPR029063 -
Cmo10g00434 285 PANTHER NICOTIANAMINE SYNTHASE 3 1 283 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01085 Cmo-Chr5:8710688 Cmo10g00434 Cmo-Chr10:1981529 5.82E-92 dispersed
Cmo10g00434 Cmo-Chr10:1981529 Cmo11g01291 Cmo-Chr11:8760626 1.45E-101 dispersed
Cmo10g00434 Cmo-Chr10:1981529 Cmo12g01034 Cmo-Chr12:9648707 3.48E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00434 K05953 - csv:101209464 453.751