Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00449 ATGGGAATTCAGGGAGACAGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTGGTCGCTAAACCCTGCGACTCCTGCAAGACAGGGCCTGCAGCCGTCTATTGTCGACCTGACTCTGCTTTCCTCTGCCTTTCCTGCGACGCCAAAATTCACTGCGCTAATAAGTTCGCCTCTCGCCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAGGCTCCTGCCGTCGTCATGTGCAAGGCCGATGCTGCAGCTCTCTGTGTTACCTGCGATGCCGATATTCATTCCGCTAACCCATTGGCACGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCCGAGTCAATGATCAAATCCTCTTCGGGTTTCAATTTTCTCCTGCCCACTGAAACCAACGCCAGTGGCTGCCACGGTGCCCATCAACACGAGGAAGTGGAGGTCGCCTCCTGGCTTTTATCCAACCCACCTTTCAACTCTAAACTCGTGGACGAACCTGAAATCAAGCCACCTGGTCATGATCATATGTTCTTCACTGAAATGGATTCCTTTATTGATTTTGACTACCCAAACCCAGTCAACAACCACAGCGCGATTAACGACAGCGTCGTCCCTGTTCAAACCAAGCCACTCTGTACTCCGGTGATCAATACCCACTCCCCAGAAAATTGCTACGACATCGATTTTTGCAGATCCAAGCTCAATTCATTCGGCCATCAACCACTATCCCTGAGCCACAGTGTTTCCTCTTCTTCCCTAGAAGTCGGAGTTGTCCCAGAAGCGAATTCGATGTCCGACATATCGTACCCATTGGGTCAAAGCGTGAGTAGTGGGGGGGACTCGGGGCTACCGGTATCGGGATCCGGCAACCAAGCGACTCAATTATGTGGAATCGACCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACAATCCGGTACGCTTCAAGAAAAGCTTACGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGACACGCTATCAGAGGTTGAAGAAATGTATGGGTCGGCTGGTTCGTCTCTGTTCTTAGCAGACACCCAGTACGGCGTGGTTCCGACGTTTTAA 1125 52.8 MGIQGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKFASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESMIKSSSGFNFLLPTETNASGCHGAHQHEEVEVASWLLSNPPFNSKLVDEPEIKPPGHDHMFFTEMDSFIDFDYPNPVNNHSAINDSVVPVQTKPLCTPVINTHSPENCYDIDFCRSKLNSFGHQPLSLSHSVSSSSLEVGVVPEANSMSDISYPLGQSVSSGGDSGLPVSGSGNQATQLCGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDTLSEVEEMYGSAGSSLFLADTQYGVVPTF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2020058 2021922 + CmoCh10G004490.1 Cmo10g00449 389795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00449 374 CDD Bbox1_BBX-like 22 65 - -
Cmo10g00449 374 Pfam CCT motif 301 343 IPR010402 GO:0005515
Cmo10g00449 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 374 - -
Cmo10g00449 374 ProSiteProfiles CCT domain profile. 301 343 IPR010402 GO:0005515
Cmo10g00449 374 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cmo10g00449 374 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cmo10g00449 374 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cmo10g00449 374 CDD Bbox1_BBX-like 66 108 - -
Cmo10g00449 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cmo10g00449 374 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cmo10g00449 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 374 IPR045281 GO:0009909
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00714 Cmo10g00449 CCT
Cmo10g00449 Cmo11g00414 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00449 Cmo-Chr10:2020058 Cmo12g00329 Cmo-Chr12:2050764 1.05E-95 dispersed
Cmo10g00449 Cmo-Chr10:2020058 Cmo11g00414 Cmo-Chr11:2033089 0 wgd
Cmo10g00449 Cmo-Chr10:2020058 Cmo05g00714 Cmo-Chr5:3664111 8.83E-100 wgd
Cmo10g00449 Cmo-Chr10:2020058 Cmo05g00714 Cmo-Chr5:3664111 8.83E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10455 PF00643 zf-B_box 6.70E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00449 - - csv:101214816 671.003