Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00459 ATGGCTACAATTTGTGTTCCTGGAATCAACAGCTTTTATTCTGATCACAAAAAGCATAAGGAATCTGCCATTGGAAGCAGCAACAATGAAGCAATGCAACTTGAGAAGTCATCATCAAAATACTATATTCCGTCGTCTACATTCTTAATGCCTGACAATGGACTAGGGGGAATCAAAAGTAAATTCACTGAAACTTTTAAAACTGAGAAGTCGAAGGTGTTTCCGGAGGACTATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAGATTGTTTTGAAATGGAACCGAGTGTTCATATGTTCGTGCTTATTGGCACTCTTTGTCGACCCGCTATATCTTTACTTGCCTGCTTTTAATGGGAATGGGCAATCCCAATGCGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTTAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCGAAGAGGTATATTAGATCTGATTTTTTCATCGATCTAATTGCCACCCTGCCTCTCCCTCAGAGACTTGTCACTGCCTCTTCCATGCAGATTGTCATCTGGTTTATCATACCTGCAACAAGGAGCCGTCTAACGGATCATAAAAACAATGCTCTTGCACTTATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATTTTCCCATTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGCGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTTTAGGTGCTACATGGTATTTGCTGTCGGTTGATAGATATACGTCATGCTGGAAATCATTTTGTAGGAAGAAAGAATACAATACACTGGAATGCAACCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCGATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCCCGAAAGGAATTTTCAAGTATGGCATTTTTGGGCAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTTATGGGTGAGACACTGTTTGCTGTGCTCATTGCCATTGTAGGCCTTGTATTATTTGCCCATCTTATCGGAAACATGCAGACGTATCTGCAATCCCTCACTGTGAGGCGTGAAGAATGGAGACTAAAGCAAAGAGACACTGAAGAGTGGATGGGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTACAATATAAGTGGGTAGCAACTCAAGGAGTTGATGAAGAAGTCATCTTGCAAAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTTCCGTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGATCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAAGGGGACCCAGTGACGGAGATGTTGTTTGTTATACGAGGCAGATTGGAGAGCTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCGATAACATTACGCCCTGGAGACTTTTGTGGGGAGGAGCTACTTTCTTGGGCCTTGCTTCCAAAATCAACCACCAACTTGCCCTCCTCAACTAGAACAGTCAGAGCGCTCAATGAAGTCGAAGCTTTTGCGCTCCGTGCTGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCACCATTGGAGAACATGGGCAGCTTGCTTTATTCAAGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTGTTAATGAAGGAATCATTTACGTTACCAGAAGAAGTGGCAGATGGAACTAGCCAAGGAGGAGAAGGATTCTCTGTTGTTTCACATCCATCTCAGGCTAAAATGTTTCTGGATGTAGCCTTACTAGCTTCAAGGTTTGCTGCAAACACACGGAGAGGCGCTCAGAGAATGAAAGATGACTTACCGAAGTTACAAAAACCCGACGAACCTGACTTTTCCATTGAGCCAGATAGATAA 2217 42.4 MATICVPGINSFYSDHKKHKESAIGSSNNEAMQLEKSSSKYYIPSSTFLMPDNGLGGIKSKFTETFKTEKSKVFPEDYEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPAFNGNGQSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFIDLIATLPLPQRLVTASSMQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNTLECNLTFFDCDTFNHNDRDTWANSTLVFEKCGPKGIFKYGIFGQAMSKNVVSSSFIEKYFYCLWWGLQNLSSYGQNLETTTFMGETLFAVLIAIVGLVLFAHLIGNMQTYLQSLTVRREEWRLKQRDTEEWMGHRQLPEDLKRRVRRFVQYKWVATQGVDEEVILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLISSLSTEGTYIVREGDPVTEMLFVIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALLPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLPEEVADGTSQGGEGFSVVSHPSQAKMFLDVALLASRFAANTRRGAQRMKDDLPKLQKPDEPDFSIEPDR 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2062469 2067243 - CmoCh10G004590.1 Cmo10g00459 389805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00459 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 735 - -
Cmo10g00459 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 58 735 - -
Cmo10g00459 738 SUPERFAMILY cAMP-binding domain-like 429 624 IPR018490 -
Cmo10g00459 738 Gene3D - 101 427 - -
Cmo10g00459 738 MobiDBLite consensus disorder prediction 712 738 - -
Cmo10g00459 738 Gene3D Helix hairpin bin 428 493 - -
Cmo10g00459 738 Gene3D Jelly Rolls 500 620 IPR014710 -
Cmo10g00459 738 CDD CAP_ED 502 633 IPR000595 -
Cmo10g00459 738 MobiDBLite consensus disorder prediction 711 738 - -
Cmo10g00459 738 SUPERFAMILY Voltage-gated potassium channels 88 424 - -
Cmo10g00459 738 Pfam Ion transport protein 96 430 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo10g00459 738 Pfam Cyclic nucleotide-binding domain 525 613 IPR000595 -
Cmo10g00459 738 SMART cnmp_10 502 633 IPR000595 -
Cmo10g00459 738 ProSiteProfiles cAMP/cGMP binding motif profile. 502 586 IPR000595 -
Cmo10g00459 738 PRINTS EAG/ELK/ERG potassium channel family signature 280 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00459 738 PRINTS EAG/ELK/ERG potassium channel family signature 397 408 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00459 738 PRINTS EAG/ELK/ERG potassium channel family signature 415 424 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00459 738 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00459 738 PRINTS EAG/ELK/ERG potassium channel family signature 465 472 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo10g00459 738 PRINTS EAG/ELK/ERG potassium channel family signature 371 388 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01626 Cmo-Chr1:12370950 Cmo10g00459 Cmo-Chr10:2062469 0 dispersed
Cmo10g00459 Cmo-Chr10:2062469 Cmo14g00651 Cmo-Chr14:3272989 0 dispersed
Cmo11g00106 Cmo-Chr11:553085 Cmo10g00459 Cmo-Chr10:2062469 1.53E-19 dispersed
Cmo10g00459 Cmo-Chr10:2062469 Cmo11g00422 Cmo-Chr11:2075897 0 wgd
Cmo10g00459 Cmo-Chr10:2062469 Cmo12g00862 Cmo-Chr12:7836426 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00459 K05391 - csv:101218643 1346.64