Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00480 ATGGAGAAAGAACAACCACGAAAACAAAGCGAACTCGGAGGAGCGTACCGAGAGATTCGCCTCCTCAACGAAGCTCCATTTACCGCGGCGTTACTAGGTTTTATTCATCGCCCTTGCTTGCTTCTCTACGAGCTTCTGCTTCTTCTTCTTCGTCTCTCCCTGTCTCTGTCGATTGATTCTGACTTCGATTGCGCTTCTGTAAACCCTAGGCATCGATGGACGGGCAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATACGATGACGAGGAAGCGGCAGCCCATGCGTACGACCTTGCAGCACTTAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGCTATCGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGACAGTCGAGGGAAGAATACATTGGGTCGTTGAGAAGAAAAAGTAGCGGGTTTTCTCGTGGGGTTTCTAAATACAGAGGCGTTGCTAGGCACCATCACAATGGTAGATGGGAAGCTCGAATTGGCAGGGTGTTTGGCAATAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTCAACGCCGTCACCAATTTCGACCTGAGCCGTTACATTAAGTGGCTAAAACCCTGCAACGACGTCGTTTACGCCAGCGACCACACCCTCAACATTGACTCTGTCCTCCCAAGCCCTAAACAAGAACTGGACCTAGGGCTCTTCCCGGCGGACCAAAACCAAAGCAGCACCGATTCGGCGACGGCGGAACCAATTGCCTTACCTCCATCCCACAGACCGACCACCACCACCACCACGTCAGCTCTCGGCCTCCTGCTTCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCAACGGAGTGTCCGTCGACGCCGACGTCAGCGGAGAAGCTCGAACGGCGACGGTGCTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGCGATAGCTCGGGATCTTACTGCTATGGAGAAGCGGATGATGCAATTTTTAGCGATTTCAACTGTTTCGTACCGCCGCCGCCGTCGCATTACGATTTTGACGATTAG 1134 50.71 MEKEQPRKQSELGGAYREIRLLNEAPFTAALLGFIHRPCLLLYELLLLLLRLSLSLSIDSDFDCASVNPRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLSTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPCNDVVYASDHTLNIDSVLPSPKQELDLGLFPADQNQSSTDSATAEPIALPPSHRPTTTTTTSALGLLLQSSKFKEMMEMNSATECPSTPTSAEKLERRRCLFPDDVQTFFACDSSGSYCYGEADDAIFSDFNCFVPPPPSHYDFDD 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2144602 2146936 - CmoCh10G004800.1 Cmo10g00480 389826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00480 377 ProSiteProfiles AP2/ERF domain profile. 63 127 IPR001471 GO:0003700|GO:0006355
Cmo10g00480 377 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Cmo10g00480 377 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Cmo10g00480 377 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Cmo10g00480 377 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Cmo10g00480 377 MobiDBLite consensus disorder prediction 264 290 - -
Cmo10g00480 377 CDD AP2 162 223 IPR001471 GO:0003700|GO:0006355
Cmo10g00480 377 Pfam AP2 domain 162 213 IPR001471 GO:0003700|GO:0006355
Cmo10g00480 377 SUPERFAMILY DNA-binding domain 162 223 IPR016177 GO:0003677
Cmo10g00480 377 Gene3D AP2/ERF domain 66 129 IPR036955 GO:0003700|GO:0006355
Cmo10g00480 377 Gene3D AP2/ERF domain 162 223 IPR036955 GO:0003700|GO:0006355
Cmo10g00480 377 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 70 356 - -
Cmo10g00480 377 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 70 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00572 Cmo-Chr8:3507877 Cmo10g00480 Cmo-Chr10:2144602 6.77E-06 dispersed
Cmo10g00480 Cmo-Chr10:2144602 Cmo17g00881 Cmo-Chr17:8019784 3.58E-120 dispersed
Cmo05g00918 Cmo-Chr5:7074597 Cmo10g00480 Cmo-Chr10:2144602 1.95E-20 transposed
Cmo14g00612 Cmo-Chr14:3097890 Cmo10g00480 Cmo-Chr10:2144602 1.58E-07 transposed
Cmo10g00480 Cmo-Chr10:2144602 Cmo12g01004 Cmo-Chr12:9385816 1.38E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10457 PF00847 AP2 2.30E-11 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00480 K09285 - csv:101219103 554.673