Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00480 | ATGGAGAAAGAACAACCACGAAAACAAAGCGAACTCGGAGGAGCGTACCGAGAGATTCGCCTCCTCAACGAAGCTCCATTTACCGCGGCGTTACTAGGTTTTATTCATCGCCCTTGCTTGCTTCTCTACGAGCTTCTGCTTCTTCTTCTTCGTCTCTCCCTGTCTCTGTCGATTGATTCTGACTTCGATTGCGCTTCTGTAAACCCTAGGCATCGATGGACGGGCAGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTGCATACGATGACGAGGAAGCGGCAGCCCATGCGTACGACCTTGCAGCACTTAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGCTATCGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGACAGTCGAGGGAAGAATACATTGGGTCGTTGAGAAGAAAAAGTAGCGGGTTTTCTCGTGGGGTTTCTAAATACAGAGGCGTTGCTAGGCACCATCACAATGGTAGATGGGAAGCTCGAATTGGCAGGGTGTTTGGCAATAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCCACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTCAACGCCGTCACCAATTTCGACCTGAGCCGTTACATTAAGTGGCTAAAACCCTGCAACGACGTCGTTTACGCCAGCGACCACACCCTCAACATTGACTCTGTCCTCCCAAGCCCTAAACAAGAACTGGACCTAGGGCTCTTCCCGGCGGACCAAAACCAAAGCAGCACCGATTCGGCGACGGCGGAACCAATTGCCTTACCTCCATCCCACAGACCGACCACCACCACCACCACGTCAGCTCTCGGCCTCCTGCTTCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCAACGGAGTGTCCGTCGACGCCGACGTCAGCGGAGAAGCTCGAACGGCGACGGTGCTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGCGATAGCTCGGGATCTTACTGCTATGGAGAAGCGGATGATGCAATTTTTAGCGATTTCAACTGTTTCGTACCGCCGCCGCCGTCGCATTACGATTTTGACGATTAG | 1134 | 50.71 | MEKEQPRKQSELGGAYREIRLLNEAPFTAALLGFIHRPCLLLYELLLLLLRLSLSLSIDSDFDCASVNPRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGQETILNFPLSTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPCNDVVYASDHTLNIDSVLPSPKQELDLGLFPADQNQSSTDSATAEPIALPPSHRPTTTTTTSALGLLLQSSKFKEMMEMNSATECPSTPTSAEKLERRRCLFPDDVQTFFACDSSGSYCYGEADDAIFSDFNCFVPPPPSHYDFDD | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2144602 | 2146936 | - | CmoCh10G004800.1 | Cmo10g00480 | 389826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00480 | 377 | ProSiteProfiles | AP2/ERF domain profile. | 63 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | ProSiteProfiles | AP2/ERF domain profile. | 163 | 221 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | SUPERFAMILY | DNA-binding domain | 70 | 129 | IPR016177 | GO:0003677 | |
Cmo10g00480 | 377 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | SMART | rav1_2 | 163 | 227 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | MobiDBLite | consensus disorder prediction | 264 | 290 | - | - | |
Cmo10g00480 | 377 | CDD | AP2 | 162 | 223 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | Pfam | AP2 domain | 162 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | SUPERFAMILY | DNA-binding domain | 162 | 223 | IPR016177 | GO:0003677 | |
Cmo10g00480 | 377 | Gene3D | AP2/ERF domain | 66 | 129 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | Gene3D | AP2/ERF domain | 162 | 223 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo10g00480 | 377 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 70 | 356 | - | - | |
Cmo10g00480 | 377 | PANTHER | AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 70 | 356 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00572 | Cmo-Chr8:3507877 | Cmo10g00480 | Cmo-Chr10:2144602 | 6.77E-06 | dispersed | |
Cmo10g00480 | Cmo-Chr10:2144602 | Cmo17g00881 | Cmo-Chr17:8019784 | 3.58E-120 | dispersed | |
Cmo05g00918 | Cmo-Chr5:7074597 | Cmo10g00480 | Cmo-Chr10:2144602 | 1.95E-20 | transposed | |
Cmo14g00612 | Cmo-Chr14:3097890 | Cmo10g00480 | Cmo-Chr10:2144602 | 1.58E-07 | transposed | |
Cmo10g00480 | Cmo-Chr10:2144602 | Cmo12g01004 | Cmo-Chr12:9385816 | 1.38E-07 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10457 | PF00847 | AP2 | 2.30E-11 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00480 | K09285 | - | csv:101219103 | 554.673 |