Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00490 ATGGCAGCGAAAACTGAAGGTAAAGCCATAGGCATCGACCTCGGCACCACCTACAGCTGCGTCGGGGTTTGGCTTAACGATCGCGTCGAGATTATCCCCAATGATCAAGGTAACCGAACCACCCCCTCTTATGTAGCTTTCACTGACACTGAGCGTTTGATCGGTGATGCGGCCAAGAATCAGGTCGCTATGAACCCTCAGAACACTGTCTTCGACGCCAAGCGCTTGATCGGCCGGCGACTCTCCGATCCGTCTGTTCAGAGTGACATGAAGCTCTGGCCATTCAAAGTGGTCGCTGGACCCGGCGAAAAGCCGATGATCATCGTCAATTACAAAGGCGAGGAAAAGCAGTTCGCTCCGGAGGAGATTTCTTCGATGGTTTTGATTAAGATGAGAGAAATCGCCGAAGCTTTTCTAGGCCAAACTATCAAGAACGCCGTTATTACAGTCCCTGCTTATTTCAACGATTCACAGAGACAAGCGACGAAAGATGCGGGTGCCATTGCTGGACTCAACGTGTTGCGTATCATCAATGAACCAACGGCGGCTGCGATTGCATATGGTTTGGATAAAAAGGCTTCTCGTAGAGGCGAACAGAACGTTCTGATCTTCGACCTCGGCGGCGGAACTTTCGACGTGTCACTCTTGACCATAGAAGAGGGAATTTTCGAGGTCAAGGCCACAGCCGGCGATACTCATCTCGGCGGCGAAGATTTCGACAACAGGCTCGTAAATCACTTCGTGACAGAGTTCAAGCGCAAGAACAAGAAAGATATAAGCGGCAACGCGAGGGCACTGAGGAGATTGAGGACGGCCTGTGAGCGAGCCAAAAGAGCGCTCTCGTCGACAACGCAAACCACGATTGAAGTCGATTCGCTTTACGAAGGAATTGACTTCTACGCGACAATTACGAGGGCTAGATTTGAGGAATTGTGTATGGATATGTTCATGAAGTGCATGGAGCCTGTGGAGAAATGTATCCGTGATGCTAAAATTGACAAAAGCCAAGTTCATGAGGTGGTTTTAGTCGGTGGATCCACTAGAATTCCCAAAGTTCAGCAGCTTCTGCAGGATTACTTCAATGGAAAGGAGCTCTGTAAAAGTATCAATCCGGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAGTTGCTCTTAGTTGTTCTTATTATGAATTTGAGTTTGAAGTTTATGAGTTCGTACGAATTTGTTACCAAACCAGCTAATATGGCTGCAATTCTAAGTGGGGAAGGAGACGAGAAAGTTCAAGATCTGTTACTTCTCGATGTCACGCCGCTCAGTCTCGGTCTAGAGACGGCCGGTGGCGTCATGACAGTCCTAATTCCTAGGAACACAACAATCCCAACAAAGAAAGAACAGATTTTCTCGACGTACTCAGACAATCAGCCAGGAGTTTTGATCCAAGTCTACGAAGGAGAGCGAGCCAGAACCAAAGACAACAATCTGCTCGGAAAGTTCGAGCTCACTGGCATTCCTCCAGCACCCAGAGGCGTCCCCCAAATCAATGTCGTCTTCGACATTGATGCGAATGGCATTCTCAACGTATCAGCAGAGGACAAGACTGCAGGGGTGAAGAACAAGATCACAATCACCAACGACAAGGGGCGAATGAGCAAAGACGAGATAGAGAGGCTGGTGAAGGAGGCAGAGAAGTACAAAGCAGAGGATGAAGAGGTGAAGAAGAAGGTGGAGGCGAAGAACGCGTTGGAGAATTATGCGTACAACATGAGGAATACTGTTAGGGATGAGAAATTTGCAGGGAAATTGAATCCAGATGATAAGCAGAAGATCGAGAAGTCCGTGGAGGACACCATCGAGTGGTTGGATAGGAACCAGCTGGCGGAGGTTGATGAACTTGAGGACAAGCTGAAGGAGCTCGAGGGTGTCTGTAATCCCATCATTGCTAAGATGTACCAGGGCGGTGCTGGCGGCGGTGCTCCTATGGGCGATGATATGCCTGGTGGTGGGTCCGCCGGGTCTGGCGGTGCTGGGCCGAAGATCGAGGAGGTTGATTGA 2034 49.51 MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFKVVAGPGEKPMIIVNYKGEEKQFAPEEISSMVLIKMREIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQLLLVVLIMNLSLKFMSSYEFVTKPANMAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVVFDIDANGILNVSAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPDDKQKIEKSVEDTIEWLDRNQLAEVDELEDKLKELEGVCNPIIAKMYQGGAGGGAPMGDDMPGGGSAGSGGAGPKIEEVD 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2190331 2193020 + CmoCh10G004900.1 Cmo10g00490 389836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00490 677 Coils Coil 266 286 - -
Cmo10g00490 677 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cmo10g00490 677 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 418 571 IPR029047 -
Cmo10g00490 677 Gene3D - 192 366 - -
Cmo10g00490 677 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 570 651 IPR029048 -
Cmo10g00490 677 Pfam Hsp70 protein 9 382 IPR013126 GO:0005524|GO:0140662
Cmo10g00490 677 Pfam Hsp70 protein 407 645 IPR013126 GO:0005524|GO:0140662
Cmo10g00490 677 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 419 576 IPR029047 -
Cmo10g00490 677 Gene3D - 71 126 - -
Cmo10g00490 677 Gene3D Actin; Chain A, domain 4 235 318 - -
Cmo10g00490 677 Gene3D - 10 382 - -
Cmo10g00490 677 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cmo10g00490 677 SUPERFAMILY Actin-like ATPase domain 197 382 IPR043129 -
Cmo10g00490 677 Coils Coil 615 635 - -
Cmo10g00490 677 CDD HSPA1-2_6-8-like_NBD 9 382 - -
Cmo10g00490 677 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cmo10g00490 677 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cmo10g00490 677 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 407 652 - -
Cmo10g00490 677 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 1 384 - -
Cmo10g00490 677 PANTHER HEAT SHOCK PROTEIN 70KDA 1 384 IPR013126 GO:0005524|GO:0140662
Cmo10g00490 677 Coils Coil 541 572 - -
Cmo10g00490 677 MobiDBLite consensus disorder prediction 646 677 - -
Cmo10g00490 677 PANTHER HEAT SHOCK PROTEIN 70KDA 407 652 IPR013126 GO:0005524|GO:0140662
Cmo10g00490 677 Gene3D - 572 646 IPR029048 -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 58 66 - -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 36 48 - -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 146 166 - -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 423 442 - -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 209 219 - -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 8 21 - -
Cmo10g00490 677 PRINTS 70kDa heat shock protein signature 504 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00490 Cmo-Chr10:2190331 Cmo15g00410 Cmo-Chr15:1867166 0 dispersed
Cmo10g00490 Cmo-Chr10:2190331 Cmo04g02755 Cmo-Chr4:19938575 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00490 K03283 - csv:101215564 1152.12