Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00491 | ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCTTGCAATGAATGTGGTTTTCCAGTCTGCAGACCCTGCTATGAGTATGAACGAAGAGAAGGAAGCCAACTCTGCCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTCGAGGGAGACGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAAAGGAACAACCACAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCTTGATGATGATGAAAGTGCACAGTACGGAAGAACACAGCCAGTAAATGGTGAGCTTCCTTTATCTTCTCAAGGATATGGAGAGCAGATGTTATCTTCTTCTCTGCACAAACGTGTGCATCCATATCCGGTTTCTGAACCAGACTTGGATCTCTCTCCTTTAAGCTACATGAAGTTTGTTTTCAACAAATCAGGGAGTGCAAGATGGGATGAAAAGAGAGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGAATGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCACGGCTTGTTATTCTCGCCTTCTTCCTTCGTTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTAACTCTAAGATATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTATGTTTCGGACGATGGAGCGTCCATGCTTACCTTTGAAGCAATGTCAGAAACTGCAGAATTTGCAAGGAAATGGGTCCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGACGAGCAATGAAGAGAGAATATGAAGAGTTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCCACAGAGGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCCGGTATGATCCAAGTTTTTCTAGGTCACAGTGGAGGCCTTGATGCCGAAGGGAATGAACTCCCCCGCCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGTGCCATGAATTCCTTGGTAACTTGCTCAGTCAAGTTTCTCTCCTTCCCAACCCCAATCCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTGCAATTTCCACAAAGATTCGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCCGTATATGTTGGCACAGGGTGCGTCTTTAGGAGGCAAGCATTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGCGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGGTAGATGGAGATGCTGCAGTGATGGAAGATGACAAGGAGCTACTAATGTCGCAAATGAATTTTGAAAAGAAATTTGGACACTCGTCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCACCCTCCTCTGGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGCTGGGCTGGATTTACGGTTCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAATTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCGCTCGGGTCCATTGAAATTTTTTTCAGCAACCACTGCCCTGTTTGGTATGGCTATAAGGGTGGAAAGCTAAAGTGGCTAGAGAGATTTGCATATGTCAACACCACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTTACGGATAAGTTTATCATGCCACCGGTAAATATAGTAACATTTACATTATCGCCTACAAAAGATGATTTAAGCAGAAAATATTATGGAAGTGGAAATTTGAAACTTACAGCTATATTGTTTGATAAATTTTCTTGGCCATCAGCCCCGATCAGCACATTTGCAAGTTTCTACTTCATTGCATTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAACTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACCACTCTGCTAATCCCTCCCACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCGGTGCTGTTGGCTTCGATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCTGATACAAAGCAATGTGGACTAAATTGCTGA | 3309 | 43.79 | MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGLDDDESAQYGRTQPVNGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPDLDLSPLSYMKFVFNKSGSARWDEKREGWKDRMDDWKLQQGNLGPEPDDANDPDMAMNDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLTLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNSLVTCSVKFLSFPTPIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKSSKSGVDGDAAVMEDDKELLMSQMNFEKKFGHSSIFVTSTLMEEGGVPPSSGPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPVNIVTFTLSPTKDDLSRKYYGSGNLKLTAILFDKFSWPSAPISTFASFYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC | 1102 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2193786 | 2198580 | + | CmoCh10G004910.1 | Cmo10g00491 | 389837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00491 | 1102 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 871 | - | - | |
Cmo10g00491 | 1102 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 109 | IPR013083 | - | |
Cmo10g00491 | 1102 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 448 | 647 | IPR029044 | - | |
Cmo10g00491 | 1102 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 897 | 1102 | - | - | |
Cmo10g00491 | 1102 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 83 | IPR001841 | - | |
Cmo10g00491 | 1102 | CDD | mRING-HC-C4C4_CesA_plant | 35 | 85 | - | - | |
Cmo10g00491 | 1102 | Pfam | Cellulose synthase | 909 | 1096 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Cmo10g00491 | 1102 | Pfam | Cellulose synthase | 343 | 873 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Cmo10g00491 | 1102 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 1 | 871 | - | - | |
Cmo10g00491 | 1102 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] | 897 | 1102 | - | - | |
Cmo10g00491 | 1102 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 356 | 852 | IPR029044 | - | |
Cmo10g00491 | 1102 | Pfam | Zinc-binding RING-finger | 27 | 103 | IPR027934 | - | |
Cmo10g00491 | 1102 | SUPERFAMILY | RING/U-box | 21 | 107 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g00475 | Cmo-Chr9:2136134 | Cmo10g00491 | Cmo-Chr10:2193786 | 0 | dispersed | |
Cmo10g00491 | Cmo-Chr10:2193786 | Cmo17g01333 | Cmo-Chr17:10447348 | 0 | dispersed | |
Cmo10g00491 | Cmo-Chr10:2193786 | Cmo11g00448 | Cmo-Chr11:2188522 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00491 | K10999 | - | csv:101214842 | 2004.95 |