Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00491 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGCAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAACTTGGACGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCTTGCAATGAATGTGGTTTTCCAGTCTGCAGACCCTGCTATGAGTATGAACGAAGAGAAGGAAGCCAACTCTGCCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCAAGGGTCGAGGGAGACGACGATGAAGAAGACATAGATGACATTGAACATGAGTTCAACATTGATGATGAAAGGAACAACCACAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGCCTTGATGATGATGAAAGTGCACAGTACGGAAGAACACAGCCAGTAAATGGTGAGCTTCCTTTATCTTCTCAAGGATATGGAGAGCAGATGTTATCTTCTTCTCTGCACAAACGTGTGCATCCATATCCGGTTTCTGAACCAGACTTGGATCTCTCTCCTTTAAGCTACATGAAGTTTGTTTTCAACAAATCAGGGAGTGCAAGATGGGATGAAAAGAGAGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGAATGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCACGGCTTGTTATTCTCGCCTTCTTCCTTCGTTATCGGATTCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTAACTCTAAGATATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCAGTAGACATCTTCGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGGTTTCATGCTATGTTTCGGACGATGGAGCGTCCATGCTTACCTTTGAAGCAATGTCAGAAACTGCAGAATTTGCAAGGAAATGGGTCCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTGAAGGAGCGACGAGCAATGAAGAGAGAATATGAAGAGTTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCCACAGAGGGATGGATAATGCAAGATGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCCGGTATGATCCAAGTTTTTCTAGGTCACAGTGGAGGCCTTGATGCCGAAGGGAATGAACTCCCCCGCCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCCGGTGCCATGAATTCCTTGGTAACTTGCTCAGTCAAGTTTCTCTCCTTCCCAACCCCAATCCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGTTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTGCAATTTCCACAAAGATTCGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCCGTATATGTTGGCACAGGGTGCGTCTTTAGGAGGCAAGCATTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGCGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGGTAGATGGAGATGCTGCAGTGATGGAAGATGACAAGGAGCTACTAATGTCGCAAATGAATTTTGAAAAGAAATTTGGACACTCGTCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCACCCTCCTCTGGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGCTGGGCTGGATTTACGGTTCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAATTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCGCTCGGGTCCATTGAAATTTTTTTCAGCAACCACTGCCCTGTTTGGTATGGCTATAAGGGTGGAAAGCTAAAGTGGCTAGAGAGATTTGCATATGTCAACACCACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTTACGGATAAGTTTATCATGCCACCGGTAAATATAGTAACATTTACATTATCGCCTACAAAAGATGATTTAAGCAGAAAATATTATGGAAGTGGAAATTTGAAACTTACAGCTATATTGTTTGATAAATTTTCTTGGCCATCAGCCCCGATCAGCACATTTGCAAGTTTCTACTTCATTGCATTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAACTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTTGGAGAATTATATGCCTTCAAATGGACCACTCTGCTAATCCCTCCCACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCGGTGCTGTTGGCTTCGATCTTCTCCTTGCTTTGGGTCCGAATTGATCCGTTTGTGATGAAAACAAAGGGACCTGATACAAAGCAATGTGGACTAAATTGCTGA 3309 43.79 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNNHSHLAEAMLHGKMSYGRGLDDDESAQYGRTQPVNGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPDLDLSPLSYMKFVFNKSGSARWDEKREGWKDRMDDWKLQQGNLGPEPDDANDPDMAMNDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLTLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKVSCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNSLVTCSVKFLSFPTPIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKSSKSGVDGDAAVMEDDKELLMSQMNFEKKFGHSSIFVTSTLMEEGGVPPSSGPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPVNIVTFTLSPTKDDLSRKYYGSGNLKLTAILFDKFSWPSAPISTFASFYFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2193786 2198580 + CmoCh10G004910.1 Cmo10g00491 389837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00491 1102 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 871 - -
Cmo10g00491 1102 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Cmo10g00491 1102 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 448 647 IPR029044 -
Cmo10g00491 1102 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 897 1102 - -
Cmo10g00491 1102 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cmo10g00491 1102 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Cmo10g00491 1102 Pfam Cellulose synthase 909 1096 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo10g00491 1102 Pfam Cellulose synthase 343 873 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo10g00491 1102 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 871 - -
Cmo10g00491 1102 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 897 1102 - -
Cmo10g00491 1102 SUPERFAMILY Nucleotide-diphospho-sugar transferases 356 852 IPR029044 -
Cmo10g00491 1102 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Cmo10g00491 1102 SUPERFAMILY RING/U-box 21 107 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00475 Cmo-Chr9:2136134 Cmo10g00491 Cmo-Chr10:2193786 0 dispersed
Cmo10g00491 Cmo-Chr10:2193786 Cmo17g01333 Cmo-Chr17:10447348 0 dispersed
Cmo10g00491 Cmo-Chr10:2193786 Cmo11g00448 Cmo-Chr11:2188522 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00491 K10999 - csv:101214842 2004.95