Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00493 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGAGCTTTCATCCTCATCTTCATCTTCATTTGCCTTTGGTTCGTTTTCCTCTGATCTCCCCACCCTCCGTCCACATGGCGCTTCTTCCTCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGGTATACCCGAGATCAGCTTTTGCAGCTTCAGGAAGTCGTGGAAGTTCCAGATGATATACTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTTAATCCATCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGATAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGCAAATCAATTGAATCGTCAAGATCACTCATCTTGGACCCGAACCACTCCTAACCAAGGGGGAGGACCCCCTGCTTTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAACTCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTCGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCCGTTCTTGAACCCACATTCTGCCCCATGTATGCTCAATTATGTTCCGATCTGAATCAGAAGCTACCACAATTTCCGTCTGATGAACCTGGTGGTAGAGAAGTTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCTGACAAGTTGAGGGAAGAGCTTAGGCAGATGACTGCCCCTGAGCAAGAGAGCGAACGCAGGGATAAAGATAGACTTTTGAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAAATCGTCCACCACATTGTGCAGGAACTTTTAGGACCAGATAACAAATCTTGTCCTGCAGAAGAAAATGTTGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGACGAGAACACGAAGTCACGACGTATAAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGACTGAAGTTCATGGTTCGTGATGTTCTTGATTTGCGTGCCAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATACAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATGAGAAATAATCGTGGCGTTGTGTCTGGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACTAGGAAGATGCCTGGTATGCCAGGCATGGATAATGACAATTGGGAGGTACATAGGACCCGACCTATACCAAGGGGGGCAGATGGATCTGGGCGTGGCTCAGCATCGTTCGTTGGCAAAGGATCCGCGTTGAATGCAAGGCTACTTCCCCAGGGTACTGGTGGGCTTATTAGTAATAAGAATAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTGCCGCAGCAACAGTTCCTCCACCTGCAGAGCGACCACAGGTTCCAGCTGCATCTTTAAAACAAGATGACCTCAGAAAGAAAACTCACTCTCTTCTTGAAGAATATTTCAGTATCCGGATTTTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTACTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATTGGGACTGGATGCTTGCTTTATGCTTCCATGCTCGATGACGCAGGCATTGATTTACCAAAAGCACCCATCAATTTTGGTGAGATAATTGGGAAACTTGTTATATCTGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGACGACAGGTTTAGGAAAGATATATTTGATGCTGTTTTGAAGACGATTAGTTCCAATGTGTCTGGACAAGGATTATTGGACTCGTTGGCATCCGATATCGAAGGCTGTCGAAATCTGGCATATTAA 2370 45.7 MQQGDQTVLSLRPGGGRPRLLGPRFELSSSSSSSFAFGSFSSDLPTLRPHGASSSSFSVKAGDSRFEGRERVRYTRDQLLQLQEVVEVPDDILKIKRDIEVEIFGEEQSWSRGESNQLNPSQNRYSEPDNRDWRGRSAQFSASGEDRSRETIRDRDFGGHFDSRQQDANQLNRQDHSSWTRTTPNQGGGPPALIKAEVPWSARRGTLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREVTFKRVLLNICQEAFEGADKLREELRQMTAPEQESERRDKDRLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKSCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHTEAEKNLGLRPGATVNMRNNRGVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVHRTRPIPRGADGSGRGSASFVGKGSALNARLLPQGTGGLISNKNSALLQGAGASTTRPVNFGHGLEPSGQVHKPIAAATVPPPAERPQVPAASLKQDDLRKKTHSLLEEYFSIRILDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIGTGCLLYASMLDDAGIDLPKAPINFGEIIGKLVISGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASDIEGCRNLAY 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2201428 2208552 + CmoCh10G004930.1 Cmo10g00493 389839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00493 789 SUPERFAMILY ARM repeat 619 777 IPR016024 -
Cmo10g00493 789 Gene3D - 617 780 - -
Cmo10g00493 789 ProSiteProfiles MI domain profile. 623 745 IPR003891 -
Cmo10g00493 789 MobiDBLite consensus disorder prediction 108 193 - -
Cmo10g00493 789 MobiDBLite consensus disorder prediction 109 126 - -
Cmo10g00493 789 MobiDBLite consensus disorder prediction 1 23 - -
Cmo10g00493 789 Gene3D - 206 440 - -
Cmo10g00493 789 SMART if4_15 214 439 IPR003890 GO:0003723|GO:0005515
Cmo10g00493 789 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 787 - -
Cmo10g00493 789 Pfam MA3 domain 624 736 IPR003891 -
Cmo10g00493 789 SMART ma3_7 624 736 IPR003891 -
Cmo10g00493 789 MobiDBLite consensus disorder prediction 163 187 - -
Cmo10g00493 789 MobiDBLite consensus disorder prediction 146 162 - -
Cmo10g00493 789 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 787 IPR045208 GO:0003743
Cmo10g00493 789 SUPERFAMILY ARM repeat 208 442 IPR016024 -
Cmo10g00493 789 Pfam MIF4G domain 214 439 IPR003890 GO:0003723|GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00493 Cmo11g00451 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01725 Cmo-Chr1:12910386 Cmo10g00493 Cmo-Chr10:2201428 0 dispersed
Cmo08g00986 Cmo-Chr8:6414756 Cmo10g00493 Cmo-Chr10:2201428 1.79E-65 dispersed
Cmo10g00493 Cmo-Chr10:2201428 Cmo17g00073 Cmo-Chr17:376950 2.20E-08 dispersed
Cmo10g00493 Cmo-Chr10:2201428 Cmo11g00451 Cmo-Chr11:2202868 0 wgd
Cmo10g00493 Cmo-Chr10:2201428 Cmo09g00404 Cmo-Chr9:1776429 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00493 K03260 - csv:101207520 1341.25