Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00500 ATGGCGGAGCGCCAATGTTTTGAAACTGACCGACTTGGAAGCTCGAAGGTTACTGCTGGGCAAGAGGACGACGAAGAAGAAATGGAAGATTCGGAGGTGGAGTTGGAAGATGGAGAAGCGTTGAGTGAGTTGCAACCGATTGAGTCGAGGATCGATTCGTTGGTTACTGAAGCTGCGGTGAGGGAGTCTCCTTCTGAAACCCTAACGGCGCCTTCTGCGAATCACTCCTCGGAGAACGGTTTGCCCGTCGATTCTGCTGCGCAGTCACTCGAAGAAGCTGAATTCAAGCAATCTCCATCTTCCTGCCATGAGCCTTTGGCTGTTGAAGCAACCGAGACAGATAAGGTGCAAGAACAAAGCCAGCTTCAGTTGTCAATATATAAAGGACCTGATCCGGAACAATCACCAACTTCTGTTACCCAGTCTATCTCATCCTCCGCAAGTCCAAGTTTATCCAAACATAAACTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCTTCCAACCATAAAACTGCATCATCGGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCGCGTAGCTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATAGAATGTTGTGATCACTCAGGCCATAGAACAGAGATTGTTTACCGGAGCCAACATAGCCACGATCCACCTAGGATGATTAGCAACCCCAAGGAAAGACAGCTTGTGCCATATGTTGAGCCTGTAGTTAAGCAAATCATTACAGAACATTCCAGAAGAGTAATTAATGATTCAAATCCTCCCACGCCTTCTAAAGAACCTTCACGGGAAACAGCTTCAGTCCTTGTAAGGAAACGACAGTACTCGAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGACGGCGAACCTGAGACAAAACAAAAAGTTAAGAAAAGTAGTGCGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCGAAATTTGTGGTGCATGCAGCGGGTGATGTGGGGATCTCGGGCGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAGTCCTCATCCCAGGAACTACTACCGTTGTACCTCTGCTGGGTGTCCAGTCCGTAAGCACATCGAATCAGCAGTAGAAAATCCATATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCGAAGAAACGACACAGTCCACCAAGTGCTCCTCATGTAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACGCAACCGAAGACAACAGACTTAACCGAGAACCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAATTGACTGGTGAGGCCTTGGAGCTTGGAGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATCGGATTTGAAATCAAGCCTTGCTGA 1509 46.26 MAERQCFETDRLGSSKVTAGQEDDEEEMEDSEVELEDGEALSELQPIESRIDSLVTEAAVRESPSETLTAPSANHSSENGLPVDSAAQSLEEAEFKQSPSSCHEPLAVEATETDKVQEQSQLQLSIYKGPDPEQSPTSVTQSISSSASPSLSKHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHRTEIVYRSQHSHDPPRMISNPKERQLVPYVEPVVKQIITEHSRRVINDSNPPTPSKEPSRETASVLVRKRQYSSDSDGNDEFKIKDENDGEPETKQKVKKSSAGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGSPHPRNYYRCTSAGCPVRKHIESAVENPYAVIITYKGVHDHDMPVPKKRHSPPSAPHVAAAAPASMSNTQPKTTDLTENQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2229196 2233533 - CmoCh10G005000.1 Cmo10g00500 389846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00500 502 MobiDBLite consensus disorder prediction 1 40 - -
Cmo10g00500 502 SUPERFAMILY WRKY DNA-binding domain 359 423 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 Coils Coil 21 41 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 157 171 - -
Cmo10g00500 502 ProSiteProfiles WRKY domain profile. 358 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 MobiDBLite consensus disorder prediction 22 40 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 60 84 - -
Cmo10g00500 502 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 22 500 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 113 155 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 276 350 - -
Cmo10g00500 502 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 500 IPR044810 GO:0003700
Cmo10g00500 502 MobiDBLite consensus disorder prediction 172 189 - -
Cmo10g00500 502 SMART WRKY_cls 363 422 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 SMART WRKY_cls 190 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 ProSiteProfiles WRKY domain profile. 191 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 Pfam WRKY DNA -binding domain 365 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 Pfam WRKY DNA -binding domain 192 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 SUPERFAMILY WRKY DNA-binding domain 188 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 MobiDBLite consensus disorder prediction 423 454 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 57 211 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 307 332 - -
Cmo10g00500 502 MobiDBLite consensus disorder prediction 277 306 - -
Cmo10g00500 502 Gene3D WRKY domain 174 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo10g00500 502 Gene3D WRKY domain 348 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00500 Cmo11g00459 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00500 Cmo-Chr10:2229196 Cmo14g00029 Cmo-Chr14:153073 7.51E-17 dispersed
Cmo10g00500 Cmo-Chr10:2229196 Cmo11g00459 Cmo-Chr11:2239194 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10458 PF03106 WRKY 1.50E-23 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00500 - - bhj:120071353 736.487