Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00500 | ATGGCGGAGCGCCAATGTTTTGAAACTGACCGACTTGGAAGCTCGAAGGTTACTGCTGGGCAAGAGGACGACGAAGAAGAAATGGAAGATTCGGAGGTGGAGTTGGAAGATGGAGAAGCGTTGAGTGAGTTGCAACCGATTGAGTCGAGGATCGATTCGTTGGTTACTGAAGCTGCGGTGAGGGAGTCTCCTTCTGAAACCCTAACGGCGCCTTCTGCGAATCACTCCTCGGAGAACGGTTTGCCCGTCGATTCTGCTGCGCAGTCACTCGAAGAAGCTGAATTCAAGCAATCTCCATCTTCCTGCCATGAGCCTTTGGCTGTTGAAGCAACCGAGACAGATAAGGTGCAAGAACAAAGCCAGCTTCAGTTGTCAATATATAAAGGACCTGATCCGGAACAATCACCAACTTCTGTTACCCAGTCTATCTCATCCTCCGCAAGTCCAAGTTTATCCAAACATAAACTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCTTCCAACCATAAAACTGCATCATCGGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATATGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCGCGTAGCTATTACAAGTGTACATATTCTGAATGCTGTGCTAAGAAGATAGAATGTTGTGATCACTCAGGCCATAGAACAGAGATTGTTTACCGGAGCCAACATAGCCACGATCCACCTAGGATGATTAGCAACCCCAAGGAAAGACAGCTTGTGCCATATGTTGAGCCTGTAGTTAAGCAAATCATTACAGAACATTCCAGAAGAGTAATTAATGATTCAAATCCTCCCACGCCTTCTAAAGAACCTTCACGGGAAACAGCTTCAGTCCTTGTAAGGAAACGACAGTACTCGAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGACGGCGAACCTGAGACAAAACAAAAAGTTAAGAAAAGTAGTGCGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCGAAATTTGTGGTGCATGCAGCGGGTGATGTGGGGATCTCGGGCGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAGTCCTCATCCCAGGAACTACTACCGTTGTACCTCTGCTGGGTGTCCAGTCCGTAAGCACATCGAATCAGCAGTAGAAAATCCATATGCAGTGATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCGAAGAAACGACACAGTCCACCAAGTGCTCCTCATGTAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACGCAACCGAAGACAACAGACTTAACCGAGAACCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAATTGACTGGTGAGGCCTTGGAGCTTGGAGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATCGGATTTGAAATCAAGCCTTGCTGA | 1509 | 46.26 | MAERQCFETDRLGSSKVTAGQEDDEEEMEDSEVELEDGEALSELQPIESRIDSLVTEAAVRESPSETLTAPSANHSSENGLPVDSAAQSLEEAEFKQSPSSCHEPLAVEATETDKVQEQSQLQLSIYKGPDPEQSPTSVTQSISSSASPSLSKHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGHRTEIVYRSQHSHDPPRMISNPKERQLVPYVEPVVKQIITEHSRRVINDSNPPTPSKEPSRETASVLVRKRQYSSDSDGNDEFKIKDENDGEPETKQKVKKSSAGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGSPHPRNYYRCTSAGCPVRKHIESAVENPYAVIITYKGVHDHDMPVPKKRHSPPSAPHVAAAAPASMSNTQPKTTDLTENQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC | 502 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2229196 | 2233533 | - | CmoCh10G005000.1 | Cmo10g00500 | 389846 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cmo10g00500 | 502 | SUPERFAMILY | WRKY DNA-binding domain | 359 | 423 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | Coils | Coil | 21 | 41 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 157 | 171 | - | - | |
Cmo10g00500 | 502 | ProSiteProfiles | WRKY domain profile. | 358 | 423 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 22 | 40 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
Cmo10g00500 | 502 | PANTHER | WRKY TRANSCRIPTION FACTOR 32-RELATED | 22 | 500 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 113 | 155 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 276 | 350 | - | - | |
Cmo10g00500 | 502 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 22 | 500 | IPR044810 | GO:0003700 | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 172 | 189 | - | - | |
Cmo10g00500 | 502 | SMART | WRKY_cls | 363 | 422 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | SMART | WRKY_cls | 190 | 248 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | ProSiteProfiles | WRKY domain profile. | 191 | 249 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | Pfam | WRKY DNA -binding domain | 365 | 420 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | Pfam | WRKY DNA -binding domain | 192 | 246 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | SUPERFAMILY | WRKY DNA-binding domain | 188 | 249 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 423 | 454 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 57 | 211 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 307 | 332 | - | - | |
Cmo10g00500 | 502 | MobiDBLite | consensus disorder prediction | 277 | 306 | - | - | |
Cmo10g00500 | 502 | Gene3D | WRKY domain | 174 | 250 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo10g00500 | 502 | Gene3D | WRKY domain | 348 | 424 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo10g00500 | Cmo11g00459 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00500 | Cmo-Chr10:2229196 | Cmo14g00029 | Cmo-Chr14:153073 | 7.51E-17 | dispersed | |
Cmo10g00500 | Cmo-Chr10:2229196 | Cmo11g00459 | Cmo-Chr11:2239194 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10458 | PF03106 | WRKY | 1.50E-23 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00500 | - | - | bhj:120071353 | 736.487 |