Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo10g00501 ATGTCGGACGAGGAGCACCACTTTGACTCTAAGGCCAACGCCAGGGAGCCCGAGACTTACCCTGAGGAAGCTAGAACCATTCGCAAAAATGGCTACATCGTAATCAATAACAGACCCTTCAAGGTCGTTGAAGTTTCTACTTCAAAACCTGGAAAGCATGGACAAGCAAAGTGCCACTTTGTGGCAGTTGACATATTCGATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGACAGATCTGTGCTCTCAAGGAAATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGA 507 44.38 MSDEEHHFDSKANAREPETYPEEARTIRKNGYIVINNRPFKVVEVSTSKPGKHGQAKCHFVAVDIFDGKILEVFVPSSQKCDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLPKDENLRRQLKEGFAHRKDLVVTVMSAMGEDRSVLSRKSVLEVKTQSYGYT 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2234753 2238759 - CmoCh10G005010.1 Cmo10g00501 389847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo10g00501 168 SUPERFAMILY Translation proteins SH3-like domain 15 85 IPR008991 -
Cmo10g00501 168 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 149 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo10g00501 168 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 149 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo10g00501 168 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5A-2 1 149 - -
Cmo10g00501 168 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo10g00501 168 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo10g00501 168 Gene3D - 1 85 IPR014722 -
Cmo10g00501 168 TIGRFAM eIF_5A: translation elongation factor IF5A 18 149 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cmo10g00501 168 SUPERFAMILY Nucleic acid-binding proteins 86 149 IPR012340 -
Cmo10g00501 168 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cmo10g00501 168 MobiDBLite consensus disorder prediction 1 23 - -
Cmo10g00501 168 Gene3D - 86 157 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00501 Cmo-Chr10:2234753 Cmo18g01144 Cmo-Chr18:11697801 1.53E-72 dispersed
Cmo10g00501 Cmo-Chr10:2234753 Cmo11g00460 Cmo-Chr11:2245677 1.49E-77 wgd
Cmo10g00501 Cmo-Chr10:2234753 Cmo09g00416 Cmo-Chr9:1817752 1.09E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo10g00501 K03263 - tcc:18587850 223.402