Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo10g00501 | ATGTCGGACGAGGAGCACCACTTTGACTCTAAGGCCAACGCCAGGGAGCCCGAGACTTACCCTGAGGAAGCTAGAACCATTCGCAAAAATGGCTACATCGTAATCAATAACAGACCCTTCAAGGTCGTTGAAGTTTCTACTTCAAAACCTGGAAAGCATGGACAAGCAAAGTGCCACTTTGTGGCAGTTGACATATTCGATGGGAAGATACTTGAAGTATTTGTTCCTTCTTCTCAGAAATGCGATGTTCCCTATGTTTATCACACCGACTATCATCTGATTGATATATGTGAGGATGGTTTTGTCAGTCTCCGTTCTGAAAATGGAAACATCAAGGATGGTCTGAGGCTCCCCAAGGATGAAAATCTGCGTAGGCAGCTTAAAGAGGGGTTCGCTCATAGAAAAGATCTTGTAGTAACTGTCATGTCTGCAATGGGAGAGGACAGATCTGTGCTCTCAAGGAAATCGGTCCTAGAAGTTAAAACACAAAGCTATGGTTACACCTGA | 507 | 44.38 | MSDEEHHFDSKANAREPETYPEEARTIRKNGYIVINNRPFKVVEVSTSKPGKHGQAKCHFVAVDIFDGKILEVFVPSSQKCDVPYVYHTDYHLIDICEDGFVSLRSENGNIKDGLRLPKDENLRRQLKEGFAHRKDLVVTVMSAMGEDRSVLSRKSVLEVKTQSYGYT | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2234753 | 2238759 | - | CmoCh10G005010.1 | Cmo10g00501 | 389847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo10g00501 | 168 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 85 | IPR008991 | - | |
Cmo10g00501 | 168 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 86 | 149 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo10g00501 | 168 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 149 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo10g00501 | 168 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 5A-2 | 1 | 149 | - | - | |
Cmo10g00501 | 168 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo10g00501 | 168 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo10g00501 | 168 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Cmo10g00501 | 168 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 18 | 149 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Cmo10g00501 | 168 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 149 | IPR012340 | - | |
Cmo10g00501 | 168 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Cmo10g00501 | 168 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo10g00501 | 168 | Gene3D | - | 86 | 157 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00501 | Cmo-Chr10:2234753 | Cmo18g01144 | Cmo-Chr18:11697801 | 1.53E-72 | dispersed | |
Cmo10g00501 | Cmo-Chr10:2234753 | Cmo11g00460 | Cmo-Chr11:2245677 | 1.49E-77 | wgd | |
Cmo10g00501 | Cmo-Chr10:2234753 | Cmo09g00416 | Cmo-Chr9:1817752 | 1.09E-67 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo10g00501 | K03263 | - | tcc:18587850 | 223.402 |